Package: MoPS

Version: 1.17.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MoPS.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MoPS_1.17.0.tar.gz

StartedAt: 2019-04-09 04:22:48 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 04:24:00 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 71.9 seconds

RetCode: 0

Status:  OK

CheckDir: MoPS.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MoPS.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MoPS_1.17.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MoPS.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MoPS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MoPS' version '1.17.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MoPS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
fit.periodic: no visible global function definition for 'lm'
fit.periodic: no visible global function definition for 'cor'
fun.lognormal: no visible global function definition for 'dlnorm'
fun.lognormal.psi: no visible global function definition for 'dlnorm'
makewave: no visible global function definition for 'integrate'
pathfunction: no visible global function definition for 'approxfun'
Undefined global functions or variables:
  approxfun cor dlnorm integrate lm
Consider adding
  importFrom("stats", "approxfun", "cor", "dlnorm", "integrate", "lm")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
fit.periodic       6.30      0    6.29
predictTimecourses 5.67      0    5.67
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
fit.periodic       7.17      0    7.17
predictTimecourses 7.06      0    7.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/MoPS.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MoPS_1.17.0.tar.gz && rm -rf MoPS.buildbin-libdir && mkdir MoPS.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MoPS.buildbin-libdir MoPS_1.17.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MoPS_1.17.0.zip && rm MoPS_1.17.0.tar.gz MoPS_1.17.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1468k  100 1468k    0     0  8979k      0 --:--:-- --:--:-- --:--:-- 9352k

install for i386

* installing *source* package 'MoPS' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MoPS'
    finding HTML links ... done
    MoPS-internal                           html  
    MoPS-package                            html  
    basic                                   html  
    ccycle                                  html  
    fit.periodic                            html  
    predictTimecourses                      html  
    result.as.dataframe                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MoPS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MoPS' as MoPS_1.17.0.zip
* DONE (MoPS)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MoPS' successfully unpacked and MD5 sums checked