Aaron Lun
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/InteractionSet |
| Branch: master |
| Last Commit: bcbcf98 |
| Last Changed Date: 2019-03-16 21:16:43 -0400 (Sat, 16 Mar 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:16:09 -0400 (Tue, 09 Apr 2019).
| Package 805/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| InteractionSet 1.11.2 Aaron Lun
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
| Package: InteractionSet |
| Version: 1.11.2 |
| Command: rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh InteractionSet_1.11.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R InteractionSet.buildbin-libdir |
| StartedAt: 2019-04-09 07:14:07 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 07:15:48 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 101.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: InteractionSet_1.11.2.tgz |
| PackageFileSize: 1.289 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf InteractionSet.buildbin-libdir && mkdir InteractionSet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh InteractionSet_1.11.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R InteractionSet.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=InteractionSet.buildbin-libdir InteractionSet_1.11.2.tar.gz' >>>>>>> * installing *source* package ‘InteractionSet’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c box_bounds.cpp -o box_bounds.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c detect_overlaps.cpp -o detect_overlaps.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c init.cpp -o init.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c link_overlaps.cpp -o link_overlaps.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c overlap_utils.cpp -o overlap_utils.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o InteractionSet.so box_bounds.o detect_overlaps.o init.o link_overlaps.o overlap_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/InteractionSet.buildbin-libdir/00LOCK-InteractionSet/00new/InteractionSet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (InteractionSet) >>>>>>> >>>>>>> FIXING LINKS FOR InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "InteractionSet.buildbin-libdir/InteractionSet/libs//InteractionSet.so"