Stefano de Pretis
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/INSPEcT |
| Branch: master |
| Last Commit: 246b5c1 |
| Last Changed Date: 2019-02-18 11:41:23 -0400 (Mon, 18 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 11:43:15 -0400 (Tue, 09 Apr 2019).
| Package 802/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| INSPEcT 1.13.15 Stefano de Pretis
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: INSPEcT |
| Version: 1.13.15 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings INSPEcT_1.13.15.tar.gz |
| StartedAt: 2019-04-09 01:23:45 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 01:38:32 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 886.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: INSPEcT.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings INSPEcT_1.13.15.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/INSPEcT.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘INSPEcT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘INSPEcT’ version ‘1.13.15’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘INSPEcT’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
modelRates 177.746 0.500 178.321
makeSimDataset 82.686 3.314 79.099
INSPEcT_diffsteady-class 39.739 11.136 26.416
plotMA 37.041 11.955 24.550
compareSteady 37.282 11.105 24.187
makeSimModel 46.295 0.068 46.382
rocCurve 46.184 0.007 46.325
rocThresholds 45.592 0.007 45.732
quantifyExpressionsFromBAMs 37.869 0.300 41.222
newINSPEcT 23.059 4.021 13.664
processingDelay 20.042 3.683 18.769
quantifyExpressionsFromTrCounts 16.718 0.024 16.746
compareSteadyNoNascent 7.885 0.088 7.973
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
| name | user | system | elapsed | |
| AIC-INSPEcT-method | 0.276 | 0.000 | 0.297 | |
| Extract | 0.493 | 0.012 | 0.506 | |
| INSPEcT-shinyApps | 0 | 0 | 0 | |
| INSPEcT_diffsteady-class | 39.739 | 11.136 | 26.416 | |
| chisqmodel | 0.371 | 0.040 | 0.412 | |
| chisqtest | 0.236 | 0.006 | 0.241 | |
| combine | 0.603 | 0.025 | 0.629 | |
| compareSteady | 37.282 | 11.105 | 24.187 | |
| compareSteadyNoNascent | 7.885 | 0.088 | 7.973 | |
| geneClass | 0.255 | 0.004 | 0.260 | |
| getModel | 0.145 | 0.000 | 0.145 | |
| inHeatmap | 0.167 | 0.012 | 0.179 | |
| labeledSF | 0.150 | 0.004 | 0.154 | |
| logLik | 0.143 | 0.004 | 0.148 | |
| makeModelRates | 1.398 | 0.000 | 1.485 | |
| makeSimDataset | 82.686 | 3.314 | 79.099 | |
| makeSimModel | 46.295 | 0.068 | 46.382 | |
| modelRates | 177.746 | 0.500 | 178.321 | |
| modelSelection | 0.668 | 0.008 | 0.693 | |
| modelingParams | 0.539 | 0.000 | 0.556 | |
| nGenes | 0.272 | 0.000 | 0.272 | |
| nTpts | 0.275 | 0.000 | 0.275 | |
| newINSPEcT | 23.059 | 4.021 | 13.664 | |
| plotGene | 0.317 | 0.012 | 0.329 | |
| plotMA | 37.041 | 11.955 | 24.550 | |
| processingDelay | 20.042 | 3.683 | 18.769 | |
| quantifyExpressionsFromBAMs | 37.869 | 0.300 | 41.222 | |
| quantifyExpressionsFromTrCounts | 16.718 | 0.024 | 16.746 | |
| ratePvals | 0.330 | 0.000 | 0.331 | |
| ratesFirstGuess | 0.188 | 0.003 | 0.190 | |
| ratesFirstGuessVar | 0.186 | 0.004 | 0.191 | |
| removeModel | 0.238 | 0.000 | 0.238 | |
| rocCurve | 46.184 | 0.007 | 46.325 | |
| rocThresholds | 45.592 | 0.007 | 45.732 | |
| split | 0.348 | 0.000 | 0.347 | |
| tpts | 0.267 | 0.004 | 0.271 | |
| viewModelRates | 0.206 | 0.000 | 0.206 | |