Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 13:11:59 -0400 (Tue, 09 Apr 2019).
Package 692/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOsummaries 2.19.0 Raivo Kolde
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GOsummaries |
Version: 2.19.0 |
Command: rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOsummaries_2.19.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOsummaries.buildbin-libdir |
StartedAt: 2019-04-09 07:08:57 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 07:09:23 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 26.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOsummaries_2.19.0.tgz |
PackageFileSize: 2.448 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOsummaries_2.19.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOsummaries.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOsummaries.buildbin-libdir GOsummaries_2.19.0.tar.gz' >>>>>>> * installing *source* package ‘GOsummaries’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c findCoordinates.cpp -o findCoordinates.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOsummaries.so findCoordinates.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/GOsummaries.buildbin-libdir/00LOCK-GOsummaries/00new/GOsummaries/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOsummaries) >>>>>>> >>>>>>> FIXING LINKS FOR GOsummaries.buildbin-libdir/GOsummaries/libs//GOsummaries.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs//GOsummaries.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs//GOsummaries.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs//GOsummaries.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs//GOsummaries.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs//GOsummaries.so"