Package: FunChIP

Version: 1.9.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL FunChIP

StartedAt: 2019-04-08 18:24:17 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:25:04 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 47.1 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL FunChIP
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘FunChIP’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I/usr/local/include `/home/biocbuild/bbs-3.9-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -fpic  -g -O2  -Wall -c kmean_function.cpp -o kmean_function.o
kmean_function.cpp: In function ‘SEXPREC* kmean_function(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:74:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (unsigned int i =0 ; i<num_data; i++){
                              ˜^˜˜˜˜˜˜˜˜
kmean_function.cpp:80:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for (unsigned int t =0 ; t < num_points; t++)
                                ˜˜^˜˜˜˜˜˜˜˜˜˜˜
kmean_function.cpp: In function ‘SEXPREC* distance_matrix(SEXP, SEXP, SEXP, SEXP, SEXP)’:
kmean_function.cpp:210:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (unsigned int i =0 ; i<num_data; i++){
                                  ˜^˜˜˜˜˜˜˜˜
kmean_function.cpp:216:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (unsigned int t =0 ; t < num_points; t++)
                                      ˜˜^˜˜˜˜˜˜˜˜˜˜˜
kmean_function.cpp: In function ‘void kma_discrete(std::vector<peak>&, const int&, std::vector<int>&, const double&, const double&, const int&, const char&, const double&, const double&, std::vector<int>&, std::vector<double>&, std::vector<int>&, const double&, const double&, int, char, char)’:
kmean_function.cpp:638:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   while( iter < iter_max and number_distances_low < dati.size()  and cluster_vuoti==0){  //and number_clusters_different > 0
                              ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
kmean_function.cpp:677:52: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
       if ( (unsigned int)number_clusters_different == dati.size() & iter != 1)
            ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
kmean_function.cpp:681:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if (number_distances_low== dati.size())
           ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
kmean_function.cpp: In function ‘void normalize_data(std::vector<int>&, std::vector<int>&, const int&)’:
kmean_function.cpp:759:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (unsigned int i=0; i<n_clust; i++)
                          ˜^˜˜˜˜˜˜˜
In file included from kmean_function.cpp:1:0:
peak.h: In member function ‘std::vector<double> peak::area(int, char) const’:
peak.h:154:46: warning: ‘D’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                 area_def[0] = sqrt(area[0]/2)/D;
                               ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o FunChIP.so kmean_function.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-FunChIP/00new/FunChIP/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FunChIP)