Simon Anders
| Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019) |
| URL: https://git.bioconductor.org/packages/DESeq |
| Branch: master |
| Last Commit: 8dba54f |
| Last Changed Date: 2019-01-04 13:29:22 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-04-09 13:25:03 -0400 (Tue, 09 Apr 2019).
| Package 416/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DESeq 1.35.1 Simon Anders
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
| Package: DESeq |
| Version: 1.35.1 |
| Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq_1.35.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq.buildbin-libdir |
| StartedAt: 2019-04-09 05:09:42 -0400 (Tue, 09 Apr 2019) |
| EndedAt: 2019-04-09 05:11:02 -0400 (Tue, 09 Apr 2019) |
| EllapsedTime: 80.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DESeq_1.35.1.tgz |
| PackageFileSize: 2.126 MiB |
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### Running command:
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### rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq_1.35.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq.buildbin-libdir DESeq_1.35.1.tar.gz'
>>>>>>>
* installing *source* package ‘DESeq’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c pval.c -o pval.o
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DESeq.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.9-bioc/meat/DESeq.buildbin-libdir/DESeq/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq)
>>>>>>>
>>>>>>> FIXING LINKS FOR DESeq.buildbin-libdir/DESeq/libs//DESeq.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "DESeq.buildbin-libdir/DESeq/libs//DESeq.so"