Package: CNVPanelizer

Version: 1.15.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNVPanelizer_1.15.0.tar.gz && rm -rf CNVPanelizer.buildbin-libdir && mkdir CNVPanelizer.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVPanelizer.buildbin-libdir CNVPanelizer_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNVPanelizer_1.15.0.zip && rm CNVPanelizer_1.15.0.tar.gz CNVPanelizer_1.15.0.zip

StartedAt: 2019-04-08 19:43:53 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 19:44:57 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 64.0 seconds

RetCode: 0

Status:  OK

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/CNVPanelizer_1.15.0.tar.gz && rm -rf CNVPanelizer.buildbin-libdir && mkdir CNVPanelizer.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVPanelizer.buildbin-libdir CNVPanelizer_1.15.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL CNVPanelizer_1.15.0.zip && rm CNVPanelizer_1.15.0.tar.gz CNVPanelizer_1.15.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 86486  100 86486    0     0   645k      0 --:--:-- --:--:-- --:--:--  692k

install for i386

* installing *source* package 'CNVPanelizer' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVPanelizer'
    finding HTML links ... done
    Background                              html  
    BedToGenomicRanges                      html  
    BootList                                html  
    CNVPanelizer-package                    html  
    CNVPanelizerFromReadCounts              html  
    CNVPanelizerFromReadCountsHelper        html  
    CollectColumnFromAllReportTables        html  
    CombinedNormalizedCounts                html  
    IndexMultipleBams                       html  
    NormalizedCounts                        html  
    PlotBootstrapDistributions              html  
    ReadCountsFromBam                       html  
    ReadXLSXToList                          html  
    ReportTables                            html  
    RunCNVPanelizerShiny                    html  
    SelectReferenceSetByInterquartileRange
                                            html  
    SelectReferenceSetByKmeans              html  
    SelectReferenceSetByPercentil           html  
    SelectReferenceSetFromReadCounts        html  
    StatusHeatmap                           html  
    WriteListToXLSX                         html  
    referenceReadCounts                     html  
    sampleReadCounts                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNVPanelizer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVPanelizer' as CNVPanelizer_1.15.0.zip
* DONE (CNVPanelizer)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'CNVPanelizer' successfully unpacked and MD5 sums checked