Package: BicARE

Version: 1.41.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BicARE_1.41.0.tar.gz && rm -rf BicARE.buildbin-libdir && mkdir BicARE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BicARE.buildbin-libdir BicARE_1.41.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BicARE_1.41.0.zip && rm BicARE_1.41.0.tar.gz BicARE_1.41.0.zip

StartedAt: 2019-04-08 18:48:05 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 18:48:38 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 32.9 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/BicARE_1.41.0.tar.gz && rm -rf BicARE.buildbin-libdir && mkdir BicARE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BicARE.buildbin-libdir BicARE_1.41.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL BicARE_1.41.0.zip && rm BicARE_1.41.0.tar.gz BicARE_1.41.0.zip
###
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install for i386

* installing *source* package 'BicARE' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
     double invk = 1/(double)*k;
            ^
BicARE.c: In function 'action':
BicARE.c:391:29: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicCol2[ncolData * z + j] = bicCol[ncolData * z +j];
                             ^
BicARE.c:380:29: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicRow2[nrowData * z + i] = bicRow[nrowData * z + i];
                             ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BicARE.buildbin-libdir/00LOCK-BicARE/00new/BicARE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BicARE'
    finding HTML links ... done
    BicARE-package                          html  
    FLOC                                    html  
    bicluster                               html  
    makeReport                              html  
    residue                                 html  
    sample.bicData                          html  
    sample.biclustering                     html  
    testAnnot                               html  
    testSet                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BicARE' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c BicARE.c -o BicARE.o
BicARE.c: In function 'floc':
BicARE.c:439:12: warning: unused variable 'invk' [-Wunused-variable]
     double invk = 1/(double)*k;
            ^
BicARE.c: In function 'action':
BicARE.c:391:29: warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicCol2[ncolData * z + j] = bicCol[ncolData * z +j];
                             ^
BicARE.c:380:29: warning: 'i' may be used uninitialized in this function [-Wmaybe-uninitialized]
        bicRow2[nrowData * z + i] = bicRow[nrowData * z + i];
                             ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BicARE.dll tmp.def BicARE.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/BicARE.buildbin-libdir/BicARE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BicARE' as BicARE_1.41.0.zip
* DONE (BicARE)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'BicARE' successfully unpacked and MD5 sums checked