BioC experimental data: CHECK report for gageData on malbec2

Package: gageData

Version: 2.14.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings gageData_2.14.0.tar.gz

StartedAt: 2017-08-15 10:44:05 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 10:44:36 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 31.4 seconds

RetCode: 0

Status:  OK

CheckDir: gageData.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings gageData_2.14.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/gageData.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘2.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gageData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.8Mb
  sub-directories of 1Mb or more:
    data  10.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
hnrnp.cnts 9.508  0.068   9.583
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/gageData.Rcheck/00check.log’
for details.

* installing *source* package ‘gageData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (gageData)

name	user	system	elapsed
bmp6	3.028	0.044	3.085
genesets	3.128	0.064	3.207
gse16873.full	1.776	0.048	1.823
hnrnp.cnts	9.508	0.068	9.583
sc.gene	0.024	0.000	0.027