BioC experimental data: CHECK report for QDNAseq.hg19 on malbec2

Package: QDNAseq.hg19

Version: 1.6.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings QDNAseq.hg19_1.6.0.tar.gz

StartedAt: 2017-08-15 11:00:50 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 11:03:16 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 146.0 seconds

RetCode: 0

Status:  OK

CheckDir: QDNAseq.hg19.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings QDNAseq.hg19_1.6.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/QDNAseq.hg19.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QDNAseq.hg19/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘QDNAseq.hg19’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QDNAseq.hg19’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 35.4Mb
  sub-directories of 1Mb or more:
    data  35.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
hg19.1kbp.SR50 19.24   0.84  20.089
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/QDNAseq.hg19.Rcheck/00check.log’
for details.

* installing *source* package ‘QDNAseq.hg19’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (QDNAseq.hg19)

name	user	system	elapsed
QDNAseq.hg19-package	0.928	0.048	0.978
hg19.1000kbp.SR50	0.052	0.008	0.060
hg19.100kbp.SR50	0.388	0.020	0.407
hg19.10kbp.SR50	2.624	0.080	2.705
hg19.15kbp.SR50	1.152	0.064	1.216
hg19.1kbp.SR50	19.240	0.840	20.089
hg19.30kbp.SR50	0.496	0.056	0.553
hg19.500kbp.SR50	0.048	0.000	0.048
hg19.50kbp.SR50	0.276	0.032	0.311
hg19.5kbp.SR50	4.316	0.276	4.593