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BioC 3.5: BUILD BIN report for cydar on veracruz2

This page was generated on 2017-08-16 13:35:36 -0400 (Wed, 16 Aug 2017).

Package 308/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cydar 1.0.0
Aaron Lun
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/cydar
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: cydar
Version: 1.0.0
Command: rm -rf cydar.buildbin-libdir && mkdir cydar.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cydar_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cydar.buildbin-libdir
StartedAt: 2017-08-16 09:59:36 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 10:00:06 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 29.7 seconds
RetCode: 0
Status:  OK 
PackageFile: cydar_1.0.0.tgz
PackageFileSize: 734 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cydar.buildbin-libdir && mkdir cydar.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cydar_1.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cydar.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cydar.buildbin-libdir cydar_1.0.0.tar.gz'
>>>>>>> 

* installing *source* package ‘cydar’ ...
** libs
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c compute_density.cpp -o compute_density.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c compute_hyperstats.cpp -o compute_hyperstats.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c compute_median_int.cpp -o compute_median_int.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c count_cells.cpp -o count_cells.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c drop_redundant.cpp -o drop_redundant.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c get_nndist.cpp -o get_nndist.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.cpp -o init.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c matrix_info.cpp -o matrix_info.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c objects.cpp -o objects.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pack_indices.cpp -o pack_indices.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c recount.cpp -o recount.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cydar.so compute_density.o compute_hyperstats.o compute_median_int.o count_cells.o drop_redundant.o get_nndist.o init.o matrix_info.o objects.o pack_indices.o recount.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/cydar.buildbin-libdir/cydar/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cydar)


>>>>>>> 
>>>>>>> FIXING LINKS FOR cydar.buildbin-libdir/cydar/libs//cydar.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "cydar.buildbin-libdir/cydar/libs//cydar.so"