BioC experimental data: CHECK report for GSVAdata on perceval

Package: GSVAdata

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSVAdata_1.5.0.tar.gz

StartedAt: 2015-08-22 09:22:53 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:24:23 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 89.6 seconds

RetCode: 0

Status:  OK

CheckDir: GSVAdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSVAdata_1.5.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/GSVAdata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSVAdata/DESCRIPTION’ ... OK
* this is package ‘GSVAdata’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSVAdata’ can be installed ... [7s/8s] OK
* checking installed package size ... NOTE
  installed size is 12.8Mb
  sub-directories of 1Mb or more:
    data  12.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [11s/12s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/GSVAdata.Rcheck/00check.log’
for details.

* installing *source* package ‘GSVAdata’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (GSVAdata)

name	user	system	elapsed
annotEntrez220212	0.062	0.016	0.085
brainTxDbSets	0.004	0.001	0.128
c2BroadSets	3.051	0.072	3.124
commonPickrellHuang	0.786	0.036	0.936
gbm_VerhaakEtAl	0.475	0.043	0.549
genderGenesEntrez	0.002	0.001	0.003
leukemia	0.321	0.032	0.369