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BioC experimental data: CHECK report for GSBenchMark on perceval

This page was generated on 2015-08-22 17:44:58 -0700 (Sat, 22 Aug 2015).

Package 106/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSBenchMark 0.103.0
Bahman Afsari
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/GSBenchMark
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: GSBenchMark
Version: 0.103.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSBenchMark_0.103.0.tar.gz
StartedAt: 2015-08-22 09:22:20 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 09:22:56 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 36.4 seconds
RetCode: 0
Status:  OK 
CheckDir: GSBenchMark.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSBenchMark_0.103.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/GSBenchMark.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘0.103.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [8s/9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.


GSBenchMark.Rcheck/00install.out:

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

GSBenchMark.Rcheck/GSBenchMark-Ex.timings:

nameusersystemelapsed
GSBenchMarkDatasets0.4160.0380.484
bipolar_GDS21900.3410.0220.432
breast_GDS8070.3330.0150.374
diracpathways0.0110.0000.012
exprsdata0.4780.0470.578
leukemia_GSEA0.3050.0280.355
logexprsdata0.5020.0270.620
marfan_GDS29600.1510.0190.198
melanoma_GDS27350.4300.0380.536
parkinsons_GDS25190.6860.0710.945
phenotypes0.4920.0370.593
prostate_GDS2545_m_nf0.2490.0260.311
prostate_GDS2545_m_p0.4850.0320.576
prostate_GDS2545_p_nf0.4270.0340.484
sarcoma_data0.8190.1271.174
squamous_GDS25200.2780.0360.338