trackViewer 1.5.2
Jianhong Ou
| Snapshot Date: 2015-08-19 16:24:33 -0700 (Wed, 19 Aug 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/trackViewer | | Last Changed Rev: 105747 / Revision: 107602 | | Last Changed Date: 2015-07-01 12:10:18 -0700 (Wed, 01 Jul 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK | |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf trackViewer.buildbin-libdir trackViewer.Rcheck && mkdir trackViewer.buildbin-libdir trackViewer.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=trackViewer.buildbin-libdir trackViewer_1.5.2.tar.gz >trackViewer.Rcheck\00install.out 2>&1 && cp trackViewer.Rcheck\00install.out trackViewer-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=trackViewer.buildbin-libdir --install="check:trackViewer-install.out" --force-multiarch --no-vignettes --timings trackViewer_1.5.2.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/trackViewer.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'trackViewer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'trackViewer' version '1.5.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'trackViewer' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
coverageGR : <anonymous> : <anonymous>: no visible global function
definition for 'IRanges'
geneModelFromTxdb: no visible global function definition for 'IRanges'
importScore : filterByRange: no visible global function definition for
'IRanges'
importScore : readWIG: no visible global function definition for
'CharacterList'
importScore : readWIG: no visible global function definition for
'IRanges'
importScore : readBED: no visible global function definition for
'IRanges'
importScore : readFourCols: no visible global function definition for
'IRanges'
interactiveViewer : importData: no visible global function definition
for 'gwindow'
interactiveViewer : importData: no visible global function definition
for 'ggroup'
interactiveViewer : importData: no visible global function definition
for 'glabel'
interactiveViewer : importData: no visible global function definition
for 'gfilebrowse'
interactiveViewer : importData : <anonymous>: no visible global
function definition for 'ggroup'
interactiveViewer : importData : <anonymous>: no visible global
function definition for 'gedit'
interactiveViewer : importData : <anonymous>: no visible global
function definition for 'gcheckbox'
interactiveViewer : importData: no visible global function definition
for 'gframe'
interactiveViewer : importData: no visible global function definition
for 'gedit'
interactiveViewer : importData: no visible global function definition
for 'gcheckbox'
interactiveViewer : importData: no visible global function definition
for 'gradio'
interactiveViewer : importData: no visible global function definition
for 'gbutton'
interactiveViewer : importData : <anonymous>: no visible global
function definition for 'IRanges'
interactiveViewer: possible error in x11(type = "Xlib"): unused
argument (type = "Xlib")
interactiveViewer : trackBrowser: no visible global function definition
for 'IRanges'
interactiveViewer : saveFile: no visible global function definition for
'gwindow'
interactiveViewer : saveFile: no visible global function definition for
'ggroup'
interactiveViewer : saveFile: no visible global function definition for
'glabel'
interactiveViewer : saveFile: no visible global function definition for
'gfilebrowse'
interactiveViewer : saveFile: no visible global function definition for
'gedit'
interactiveViewer : saveFile: no visible global function definition for
'gbutton'
interactiveViewer : xaxisDialog: no visible global function definition
for 'gwindow'
interactiveViewer : xaxisDialog: no visible global function definition
for 'ggroup'
interactiveViewer : xaxisDialog: no visible global function definition
for 'gframe'
interactiveViewer : xaxisDialog: no visible global function definition
for 'glabel'
interactiveViewer : xaxisDialog: no visible global function definition
for 'gradio'
interactiveViewer : xaxisDialog: no visible global function definition
for 'gedit'
interactiveViewer : xaxisDialog: no visible global function definition
for 'gbutton'
interactiveViewer : margintopDialog: no visible global function
definition for 'gwindow'
interactiveViewer : margintopDialog: no visible global function
definition for 'ggroup'
interactiveViewer : margintopDialog: no visible global function
definition for 'gframe'
interactiveViewer : margintopDialog: no visible global function
definition for 'glabel'
interactiveViewer : margintopDialog: no visible global function
definition for 'gedit'
interactiveViewer : margintopDialog: no visible global function
definition for 'gbutton'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'gwindow'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'ggroup'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'gframe'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'glabel'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'gradio'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'gedit'
interactiveViewer : trackLabelDialog: no visible global function
definition for 'gbutton'
interactiveViewer : trackDialog: no visible global function definition
for 'gwindow'
interactiveViewer : trackDialog: no visible global function definition
for 'ggroup'
interactiveViewer : trackDialog: no visible global function definition
for 'gframe'
interactiveViewer : trackDialog: no visible global function definition
for 'gradio'
interactiveViewer : trackDialog: no visible global function definition
for 'glabel'
interactiveViewer : trackDialog: no visible global function definition
for 'gedit'
interactiveViewer : trackDialog: no visible global function definition
for 'gbutton'
locateScale: no visible global function definition for 'IRanges'
parseWIG : parser : <anonymous>: no visible global function definition
for 'IRanges'
plotDataTrack: no visible global function definition for 'IRanges'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [78s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
trackViewer-package 22.46 0.11 22.59
parseWIG 13.73 0.06 13.79
viewTracks 13.00 0.00 13.00
geneModelFromTxdb 9.65 0.42 10.10
** running examples for arch 'x64' ... [98s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
trackViewer-package 27.89 0.19 28.09
viewTracks 17.81 0.08 17.89
parseWIG 17.31 0.03 17.34
geneModelFromTxdb 11.62 0.64 12.29
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R' [14s]
[15s] OK
** running tests for arch 'x64' ...
Running 'runTests.R' [16s]
[16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbld/bbs-3.2-bioc/meat/trackViewer.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'trackViewer' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'trackViewer' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trackViewer' as trackViewer_1.5.2.zip
* DONE (trackViewer)