BioC 3.2: CHECK report for mogsa on moscato1

Package: mogsa

Version: 1.1.5

Command: rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.1.5.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.1.5.tar.gz

StartedAt: 2015-08-20 07:29:14 -0700 (Thu, 20 Aug 2015)

EndedAt: 2015-08-20 07:33:20 -0700 (Thu, 20 Aug 2015)

EllapsedTime: 246.0 seconds

RetCode: 0

Status:  OK

CheckDir: mogsa.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf mogsa.buildbin-libdir mogsa.Rcheck && mkdir mogsa.buildbin-libdir mogsa.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mogsa.buildbin-libdir mogsa_1.1.5.tar.gz >mogsa.Rcheck\00install.out 2>&1 && cp mogsa.Rcheck\00install.out mogsa-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=mogsa.buildbin-libdir --install="check:mogsa-install.out" --force-multiarch --no-vignettes --timings mogsa_1.1.5.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/mogsa.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mogsa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mogsa' version '1.1.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mogsa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [27s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
mbpca 5.82   0.01    5.84
** running examples for arch 'x64' ... [32s] OK
Examples with CPU or elapsed time > 5s
      user system elapsed
mbpca 6.72      0    6.76
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'mogsa' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mogsa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mogsa' as mogsa_1.1.5.zip
* DONE (mogsa)

name	user	system	elapsed
GIS	1.45	0.00	1.46
annotate.gs	0.51	0.02	0.53
bootMbpca	0	0	0
box.gs.feature	0.5	0.0	0.5
combine-methods	0.67	0.00	0.67
decompose.gs.group	0.47	0.02	0.48
decompose.gs.ind	0.18	0.00	0.17
distMoa	0.7	0.0	0.7
getmgsa	0.43	0.00	0.44
matpower	0	0	0
mbpca	5.82	0.01	5.84
mgsa-class	0.55	0.00	0.54
moGap	2.42	0.00	2.42
moa-class	0.24	0.00	0.24
moa	0.29	0.00	0.30
moa.sup-class	0.27	0.00	0.26
moaCoef	0.84	0.00	0.84
moaScore	0.84	0.00	0.85
mogsa-package	0.60	0.00	0.59
mogsa	0.7	0.0	0.7
pairwise.rv	0.06	0.00	0.06
plotGS	0.45	0.02	0.47
prepGraphite	0.22	0.00	0.33
prepMsigDB	0.02	0.00	0.01
prepSupMoa	2.13	0.09	2.25
softK	0	0	0
sup.moa	0.90	0.00	0.91
wsvd	0	0	0

name	user	system	elapsed
GIS	1.53	0.09	1.62
annotate.gs	0.56	0.00	0.56
bootMbpca	0	0	0
box.gs.feature	0.47	0.02	0.48
combine-methods	0.80	0.03	0.83
decompose.gs.group	0.78	0.02	0.80
decompose.gs.ind	0.26	0.01	0.28
distMoa	0.83	0.00	0.82
getmgsa	0.3	0.0	0.3
matpower	0	0	0
mbpca	6.72	0.00	6.76
mgsa-class	0.83	0.02	0.84
moGap	2.93	0.00	2.93
moa-class	0.2	0.0	0.2
moa	0.38	0.00	0.38
moa.sup-class	0.56	0.00	0.56
moaCoef	0.75	0.00	0.75
moaScore	0.95	0.00	0.95
mogsa-package	0.83	0.01	0.84
mogsa	1.24	0.00	1.25
pairwise.rv	0.03	0.00	0.03
plotGS	0.19	0.00	0.19
prepGraphite	0.39	0.00	0.39
prepMsigDB	0	0	0
prepSupMoa	1.53	0.02	1.55
softK	0	0	0
sup.moa	0.55	0.01	0.57
wsvd	0	0	0