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This page was generated on 2015-08-20 13:22:44 -0700 (Thu, 20 Aug 2015).
| Package 906/1069 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| S4Vectors 0.7.13 Bioconductor Package Maintainer
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ WARNINGS ] | OK | | |||||
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK | | |||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
| Package: S4Vectors |
| Version: 0.7.13 |
| Command: rm -rf S4Vectors.buildbin-libdir S4Vectors.Rcheck && mkdir S4Vectors.buildbin-libdir S4Vectors.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=S4Vectors.buildbin-libdir S4Vectors_0.7.13.tar.gz >S4Vectors.Rcheck\00install.out 2>&1 && cp S4Vectors.Rcheck\00install.out S4Vectors-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=S4Vectors.buildbin-libdir --install="check:S4Vectors-install.out" --force-multiarch --no-vignettes --timings S4Vectors_0.7.13.tar.gz |
| StartedAt: 2015-08-20 10:05:05 -0700 (Thu, 20 Aug 2015) |
| EndedAt: 2015-08-20 10:07:36 -0700 (Thu, 20 Aug 2015) |
| EllapsedTime: 151.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: S4Vectors.Rcheck |
| Warnings: 4 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf S4Vectors.buildbin-libdir S4Vectors.Rcheck && mkdir S4Vectors.buildbin-libdir S4Vectors.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=S4Vectors.buildbin-libdir S4Vectors_0.7.13.tar.gz >S4Vectors.Rcheck\00install.out 2>&1 && cp S4Vectors.Rcheck\00install.out S4Vectors-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=S4Vectors.buildbin-libdir --install="check:S4Vectors-install.out" --force-multiarch --no-vignettes --timings S4Vectors_0.7.13.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.Rcheck' * using R version 3.2.2 (2015-08-14) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'S4Vectors/DESCRIPTION' ... OK * this is package 'S4Vectors' version '0.7.13' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'S4Vectors' can be installed ... WARNING Found the following significant warnings: Warning: unable to find a consistent ordering of superclasses for class "StandardGenericFilterClosure": order chosen is inconsistent with the superclasses of "standardGeneric" See 'D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'methods' 'utils' 'stats' 'stats4' 'BiocGenerics' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: 'stats:::na.exclude.data.frame' 'stats:::na.omit.data.frame' See the note in ?`:::` about the use of this operator. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: 'anyMissing' 'makePrettyMatrixForCompactPrinting' 'new_SimpleList_from_list' * checking S3 generic/method consistency ... WARNING droplevels: function(x, ...) droplevels.List: function(x, except) droplevels: function(x, ...) droplevels.Rle: function(x) droplevels: function(x, ...) droplevels.Rle: function(x) droplevels: function(x, ...) droplevels.List: function(x, except) droplevels: function(x, ...) droplevels.Rle: function(x) droplevels: function(x, ...) droplevels.List: function(x, except) See section 'Generic functions and methods' in the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .fast_subset_List_by_LL: no visible global function definition for 'PartitioningByEnd' .fast_subset_List_by_NL: no visible global function definition for 'PartitioningByEnd' .fast_subset_List_by_RL: no visible global function definition for 'PartitioningByEnd' .unlist_NL_subscript: no visible global function definition for 'PartitioningByEnd' .unlist_RL_subscript: no visible global function definition for 'PartitioningByEnd' .unlist_RL_subscript: no visible global function definition for 'shift' aggregate.List: no visible global function definition for 'SimpleAtomicList' pc: no visible binding for global variable 'togroup' pc: no visible global function definition for 'splitAsList' phead: no visible global function definition for 'IRanges' phead: no visible global function definition for 'PartitioningByEnd' ptail: no visible global function definition for 'IRanges' ptail: no visible global function definition for 'PartitioningByEnd' aggregate,List : .local: no visible global function definition for 'SimpleAtomicList' coerce,ANY-List: no visible global function definition for 'PartitioningByEnd' coerce,integer-List: no visible global function definition for 'PartitioningByEnd' evalSeparately,FilterRules : .local : <anonymous>: no visible global function definition for '.' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: 'anyDuplicated.WindowNSBS' 'as.vector.Rle' 'droplevels.List' 'droplevels.Rle' 'filterRules' 'head.Vector' 'parallelSlotNames' 'pc' 'phead' 'ptail' 'selectHits' 'shiftApply' 'tail.Vector' 'window.Vector' Undocumented S4 methods: generic 'Rle' and siglist 'Rle,missing' generic 'anyDuplicated' and siglist 'Rle' generic 'anyDuplicated' and siglist 'WindowNSBS' generic 'anyNA' and siglist 'Rle' generic 'anyNA' and siglist 'Vector' generic 'as.integer' and siglist 'WindowNSBS' generic 'countMatches' and siglist 'ANY' generic 'do.call' and siglist 'ANY,List' generic 'droplevels' and siglist 'DataFrame' generic 'droplevels' and siglist 'List' generic 'droplevels' and siglist 'Rle' generic 'eval' and siglist 'expression,Vector' generic 'eval' and siglist 'language,Vector' generic 'extractROWS' and siglist 'ANY,ANY' generic 'extractROWS' and siglist 'DataFrame,ANY' generic 'extractROWS' and siglist 'Hits,ANY' generic 'extractROWS' and siglist 'NULL,ANY' generic 'extractROWS' and siglist 'Rle,ANY' generic 'extractROWS' and siglist 'SimpleList,ANY' generic 'extractROWS' and siglist 'Vector,ANY' generic 'extractROWS' and siglist 'vectorORfactor,WindowNSBS' generic 'findMatches' and siglist 'ANY' generic 'getListElement' and siglist 'SimpleList' generic 'getListElement' and siglist 'list' generic 'grep' and siglist 'ANY,Rle' generic 'grepl' and siglist 'ANY,Rle' generic 'head' and siglist 'Vector' generic 'isStrictlySorted' and siglist 'Rle' generic 'isStrictlySorted' and siglist 'WindowNSBS' generic 'length' and siglist 'WindowNSBS' generic 'match' and siglist 'ANY,Rle' generic 'match' and siglist 'Rle,Rle' generic 'parallelSlotNames' and siglist 'Hits' generic 'parallelSlotNames' and siglist 'Vector' generic 'rank' and siglist 'Rle' generic 'rank' and siglist 'Vector' generic 'rep' and siglist 'DataFrame' generic 'replaceROWS' and siglist 'DataFrame' generic 'replaceROWS' and siglist 'Rle' generic 'replaceROWS' and siglist 'SimpleList' generic 'setListElement' and siglist 'SimpleList' generic 'showAsCell' and siglist 'Date' generic 'showAsCell' and siglist 'POSIXt' generic 'tail' and siglist 'Vector' generic 'transform' and siglist 'DataTable' generic 'window' and siglist 'Vector' generic 'with' and siglist 'Vector' generic 'xtfrm' and siglist 'Rle' generic 'xtfrm' and siglist 'Vector' All user-level objects in a package (including S4 classes and methods) should have documentation entries. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in documentation object 'Rle-runstat' 'y' 'algorithm' 'print.level' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.buildbin-libdir/S4Vectors/libs/i386/S4Vectors.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'printf', possibly from 'printf' (C) File 'D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.buildbin-libdir/S4Vectors/libs/x64/S4Vectors.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor the system RNG. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [5s] OK ** running examples for arch 'x64' ... [5s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'S4Vectors_unit_tests.R' [12s] [12s] OK ** running tests for arch 'x64' ... Running 'S4Vectors_unit_tests.R' [14s] [14s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 4 WARNINGs, 4 NOTEs See 'D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.Rcheck/00check.log' for details.
S4Vectors.Rcheck/00install.out:
install for i386 * installing *source* package 'S4Vectors' ... ** libs gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c AEbufs.c -o AEbufs.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c DataFrame_class.c -o DataFrame_class.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Hits_class.c -o Hits_class.o Hits_class.c: In function 'Hits_new': Hits_class.c:157:13: warning: 'q_hits2' may be used uninitialized in this function [-Wuninitialized] Hits_class.c:144:7: note: 'q_hits2' was declared here Hits_class.c:233:11: warning: 'revmap' may be used uninitialized in this function [-Wuninitialized] gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c List_class.c -o List_class.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_S4Vectors.c -o R_init_S4Vectors.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rle_class.c -o Rle_class.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Rle_utils.c -o Rle_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c SEXP_utils.c -o SEXP_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c SimpleList_class.c -o SimpleList_class.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c anyMissing.c -o anyMissing.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c eval_utils.c -o eval_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c hash_utils.c -o hash_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c int_utils.c -o int_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c logical_utils.c -o logical_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c safe_arithm.c -o safe_arithm.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c sort_utils.c -o sort_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c str_utils.c -o str_utils.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c subsetting_internals.c -o subsetting_internals.o gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O3 -Wall -std=gnu99 -mtune=core2 -c vector_utils.c -o vector_utils.o gcc -m32 -shared -s -static-libgcc -o S4Vectors.dll tmp.def AEbufs.o DataFrame_class.o Hits_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o eval_utils.o hash_utils.o int_utils.o logical_utils.o safe_arithm.o sort_utils.o str_utils.o subsetting_internals.o vector_utils.o -Ld:/RCompile/r-compiling/local/local320/lib/i386 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR installing to D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.buildbin-libdir/S4Vectors/libs/i386 ** R ** inst ** preparing package for lazy loading Creating a generic function for 'na.omit' from package 'stats' in package 'S4Vectors' Creating a generic function for 'na.exclude' from package 'stats' in package 'S4Vectors' Creating a generic function for 'complete.cases' from package 'stats' in package 'S4Vectors' Creating a generic function for 'transform' from package 'base' in package 'S4Vectors' Creating a generic function for 'merge' from package 'base' in package 'S4Vectors' Creating a generic function for 'by' from package 'base' in package 'S4Vectors' Creating a generic function for 'window' from package 'stats' in package 'S4Vectors' Creating a generic function for 'head' from package 'utils' in package 'S4Vectors' Creating a generic function for 'tail' from package 'utils' in package 'S4Vectors' Creating a generic function for 'with' from package 'base' in package 'S4Vectors' Creating a generic function for '%in%' from package 'base' in package 'S4Vectors' Creating a new generic function for 'findMatches' in package 'S4Vectors' Creating a generic function for 'as.matrix' from package 'base' in package 'S4Vectors' Creating a generic function for 'as.table' from package 'base' in package 'S4Vectors' Creating a generic function for 't' from package 'base' in package 'S4Vectors' Creating a generic function for 'as.factor' from package 'base' in package 'S4Vectors' Creating a generic function for 'rev' from package 'base' in package 'S4Vectors' Creating a generic function for 'which' from package 'base' in package 'S4Vectors' Creating a generic function for 'which.max' from package 'base' in package 'S4Vectors' Creating a generic function for 'ifelse' from package 'base' in package 'S4Vectors' Creating a generic function for 'diff' from package 'base' in package 'S4Vectors' Creating a generic function for 'mean' from package 'base' in package 'S4Vectors' Creating a generic function for 'var' from package 'stats' in package 'S4Vectors' Creating a generic function for 'cov' from package 'stats' in package 'S4Vectors' Creating a generic function for 'cor' from package 'stats' in package 'S4Vectors' Creating a generic function for 'sd' from package 'stats' in package 'S4Vectors' Creating a generic function for 'median' from package 'stats' in package 'S4Vectors' Creating a generic function for 'smoothEnds' from package 'stats' in package 'S4Vectors' Creating a generic function for 'runmed' from package 'stats' in package 'S4Vectors' Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors' Creating a generic function for 'substr' from package 'base' in package 'S4Vectors' Creating a generic function for 'substring' from package 'base' in package 'S4Vectors' Creating a generic function for 'chartr' from package 'base' in package 'S4Vectors' Creating a generic function for 'tolower' from package 'base' in package 'S4Vectors' Creating a generic function for 'toupper' from package 'base' in package 'S4Vectors' Creating a generic function for 'sub' from package 'base' in package 'S4Vectors' Creating a generic function for 'gsub' from package 'base' in package 'S4Vectors' Creating a generic function for 'levels' from package 'base' in package 'S4Vectors' Creating a generic function for 'droplevels' from package 'base' in package 'S4Vectors' Creating a generic function for 'within' from package 'base' in package 'S4Vectors' Warning: unable to find a consistent ordering of superclasses for class "StandardGenericFilterClosure": order chosen is inconsistent with the superclasses of "standardGeneric" Creating a generic function for 'aggregate' from package 'stats' in package 'S4Vectors' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'S4Vectors' ... ** libs gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c AEbufs.c -o AEbufs.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c DataFrame_class.c -o DataFrame_class.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Hits_class.c -o Hits_class.o Hits_class.c: In function 'Hits_new': Hits_class.c:157:13: warning: 'q_hits2' may be used uninitialized in this function [-Wuninitialized] Hits_class.c:144:7: note: 'q_hits2' was declared here Hits_class.c:233:11: warning: 'revmap' may be used uninitialized in this function [-Wuninitialized] gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c List_class.c -o List_class.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_S4Vectors.c -o R_init_S4Vectors.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rle_class.c -o Rle_class.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Rle_utils.c -o Rle_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c SEXP_utils.c -o SEXP_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c SimpleList_class.c -o SimpleList_class.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c anyMissing.c -o anyMissing.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c eval_utils.c -o eval_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c hash_utils.c -o hash_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c int_utils.c -o int_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c logical_utils.c -o logical_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c safe_arithm.c -o safe_arithm.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c sort_utils.c -o sort_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c str_utils.c -o str_utils.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c subsetting_internals.c -o subsetting_internals.o gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -I"d:/RCompile/r-compiling/local/local320/include" -O2 -Wall -std=gnu99 -mtune=core2 -c vector_utils.c -o vector_utils.o gcc -m64 -shared -s -static-libgcc -o S4Vectors.dll tmp.def AEbufs.o DataFrame_class.o Hits_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o eval_utils.o hash_utils.o int_utils.o logical_utils.o safe_arithm.o sort_utils.o str_utils.o subsetting_internals.o vector_utils.o -Ld:/RCompile/r-compiling/local/local320/lib/x64 -Ld:/RCompile/r-compiling/local/local320/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR installing to D:/biocbld/bbs-3.2-bioc/meat/S4Vectors.buildbin-libdir/S4Vectors/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'S4Vectors' as S4Vectors_0.7.13.zip * DONE (S4Vectors)
S4Vectors.Rcheck/examples_i386/S4Vectors-Ex.timings:
| name | user | system | elapsed | |
| Annotated-class | 1.17 | 0.02 | 1.19 | |
| DataFrame-class | 0.22 | 0.01 | 0.23 | |
| DataTable-class | 0.03 | 0.00 | 0.03 | |
| FilterRules-class | 0.13 | 0.00 | 0.12 | |
| Hits-class | 0.03 | 0.00 | 0.03 | |
| Hits-comparison | 0.06 | 0.00 | 0.06 | |
| Hits-setops | 0.06 | 0.00 | 0.07 | |
| List-class | 0 | 0 | 0 | |
| List-utils | 0.23 | 0.00 | 0.24 | |
| Rle-class | 0.07 | 0.00 | 0.06 | |
| Rle-runstat | 0.10 | 0.00 | 0.11 | |
| Rle-utils | 0.02 | 0.00 | 0.01 | |
| SimpleList-class | 0.05 | 0.00 | 0.05 | |
| Vector-class | 0 | 0 | 0 | |
| Vector-comparison | 0.05 | 0.00 | 0.04 | |
| aggregate-methods | 0.05 | 0.00 | 0.05 | |
| isSorted | 0.01 | 0.00 | 0.02 | |
| str-utils | 0 | 0 | 0 | |
S4Vectors.Rcheck/examples_x64/S4Vectors-Ex.timings:
| name | user | system | elapsed | |
| Annotated-class | 1.50 | 0.02 | 1.53 | |
| DataFrame-class | 0.31 | 0.00 | 0.31 | |
| DataTable-class | 0.04 | 0.00 | 0.05 | |
| FilterRules-class | 0.13 | 0.00 | 0.13 | |
| Hits-class | 0.01 | 0.00 | 0.01 | |
| Hits-comparison | 0.07 | 0.00 | 0.06 | |
| Hits-setops | 0.07 | 0.00 | 0.08 | |
| List-class | 0 | 0 | 0 | |
| List-utils | 0.11 | 0.00 | 0.11 | |
| Rle-class | 0.05 | 0.00 | 0.04 | |
| Rle-runstat | 0.20 | 0.00 | 0.21 | |
| Rle-utils | 0.01 | 0.00 | 0.01 | |
| SimpleList-class | 0.05 | 0.00 | 0.05 | |
| Vector-class | 0 | 0 | 0 | |
| Vector-comparison | 0.05 | 0.00 | 0.05 | |
| aggregate-methods | 0.06 | 0.00 | 0.06 | |
| isSorted | 0 | 0 | 0 | |
| str-utils | 0 | 0 | 0 | |