| Back to the "Multiple platform build/check report" | A [B] C D E F G H I J K L M N O P Q R S T U V W X Y Z |
This page was generated on 2015-10-27 17:42:10 -0400 (Tue, 27 Oct 2015).
| Package 122/1104 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| BrowserViz 1.2.0 Paul Shannon
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK |  | |||||
| windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | ERROR | OK | ||||||
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | ERROR | OK | ||||||
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | [ ERROR ] | OK |
| Package: BrowserViz |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings BrowserViz_1.2.0.tar.gz |
| StartedAt: 2015-10-27 01:51:02 -0400 (Tue, 27 Oct 2015) |
| EndedAt: 2015-10-27 01:52:25 -0400 (Tue, 27 Oct 2015) |
| EllapsedTime: 82.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: BrowserViz.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings BrowserViz_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BrowserViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BrowserViz’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BrowserViz’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Rcpp’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘BrowserViz-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BrowserVizClass
> ### Title: BrowserViz: a base class (for extension) and standalone example
> ### of R/Javascript interactive web browser visualization
> ### Aliases: BrowserViz class:BrowserVizClass BrowserVizClass-class
> ### show,BrowserVizClass-method setBrowserWindowTitle
> ### setBrowserWindowTitle,BrowserVizClass-method
> ### \S4method{setBrowserWindowTitle}{BrowserVizClass}
> ### getBrowserWindowSize getBrowserWindowSize,BrowserVizClass-method
> ### \S4method{getBrowserWindowSize}{BrowserVizClass}
> ### getBrowserWindowTitle getBrowserWindowTitle,BrowserVizClass-method
> ### \S4method{getBrowserWindowTitle}{BrowserVizClass}
> ### browserResponseReady browserResponseReady,BrowserVizClass-method
> ### \S4method{browserResponseReady}{BrowserVizClass} getBrowserResponse
> ### getBrowserResponse,BrowserVizClass-method
> ### \S4method{getBrowserResponse}{BrowserVizClass} port
> ### port,BrowserVizClass-method \S4method{port}{BrowserVizClass}
> ### closeWebSocket closeWebSocket,BrowserVizClass-method
> ### \S4method{closeWebSocket}{BrowserVizClass} getBrowserInfo
> ### getBrowserInfo,BrowserVizClass-method
> ### \S4method{getBrowserInfo}{BrowserVizClass} send
> ### send,BrowserVizClass-method \S4method{send}{BrowserVizClass} ready
> ### ready,BrowserVizClass-method \S4method{ready}{BrowserVizClass} toJSON
> ### addRMessageHandler
> ### Keywords: classes methods
>
> ### ** Examples
>
> library(BrowserViz)
>
> bv <- BrowserViz(4000:4024)
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:4000.
Error: totalWait < maxWaitPermitted is not TRUE
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’ [1s/42s]
ERROR
Running the tests in ‘tests/runTests.R’ failed.
Last 13 lines of output:
Test files with failing tests
test_BrowserViz.R
testConstructor
testGetBrowserInfo
testGetWindowSize
testMultipleOpenCloseOnSamePort
testWindowTitle
Error in BiocGenerics:::testPackage("BrowserViz") :
unit tests failed for package BrowserViz
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE
See
‘/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/00check.log’
for details.
BrowserViz.Rcheck/tests/runTests.Rout.fail:
R version 3.2.2 (2015-08-14) -- "Fire Safety"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin13.4.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("BrowserViz")
Attaching package: 'jsonlite'
The following object is masked from 'package:utils':
View
Attaching package: 'BrowserViz'
The following object is masked from 'package:jsonlite':
toJSON
[1] "--- testConstructor"
BrowserViz constructor starting with html file '/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html'
html file exists? TRUE
summoning default browser to get http://localhost:7200
[1] --- entering BrowserViz .setupWebSocketHandlers
[1] browserFile: /Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html
starting daemonized server on port 7200
BrowserViz websocket not ready, waiting 0.10 seconds
BrowserViz websocket not ready, waiting 0.10 seconds
BrowserViz websocket not ready, waiting 0.10 seconds
BrowserViz websocket not ready, waiting 0.10 seconds
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7200.
BrowserViz websocket not ready, waiting 0.10 seconds
BrowserViz websocket not ready, waiting 0.10 seconds
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Timing stopped at: 0.057 0.007 10.229
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- testGetBrowserInfo"
BrowserViz constructor starting with html file '/Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html'
html file exists? TRUE
summoning default browser to get http://localhost:7201
[1] --- entering BrowserViz .setupWebSocketHandlers
[1] browserFile: /Users/biocbuild/bbs-3.2-bioc/meat/BrowserViz.Rcheck/BrowserViz/scripts/viz.html
starting daemonized server on port 7201
BrowserViz websocket not ready, waiting 0.10 seconds
BrowserViz websocket not ready, waiting 0.10 seconds
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BrowserViz websocket not ready, waiting 0.10 seconds
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7201.
BrowserViz websocket not ready, waiting 0.10 seconds
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Timing stopped at: 0.053 0.007 10.227
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- testGetWindowSize"
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7202.
Timing stopped at: 0.017 0.004 10.105
Error : totalWait < maxWaitPermitted is not TRUE
[1] "--- testMultipleOpenCloseOnSamePort"
Timing stopped at: 0.002 0 0.003
Error in BrowserViz(PORT_RANGE[1]) :
no available ports in range 7200:7200
[1] "--- testRunOutOfPorts"
[1] "--- testWindowTitle"
LSOpenURLsWithRole() failed with error -10810 for the URL http://localhost:7203.
Timing stopped at: 0.022 0.005 10.172
Error : totalWait < maxWaitPermitted is not TRUE
RUNIT TEST PROTOCOL -- Tue Oct 27 01:52:18 2015
***********************************************
Number of test functions: 6
Number of errors: 5
Number of failures: 0
1 Test Suite :
BrowserViz RUnit Tests - 6 test functions, 5 errors, 0 failures
ERROR in testConstructor: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in testGetBrowserInfo: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in testGetWindowSize: Error : totalWait < maxWaitPermitted is not TRUE
ERROR in testMultipleOpenCloseOnSamePort: Error in BrowserViz(PORT_RANGE[1]) :
no available ports in range 7200:7200
ERROR in testWindowTitle: Error : totalWait < maxWaitPermitted is not TRUE
Test files with failing tests
test_BrowserViz.R
testConstructor
testGetBrowserInfo
testGetWindowSize
testMultipleOpenCloseOnSamePort
testWindowTitle
Error in BiocGenerics:::testPackage("BrowserViz") :
unit tests failed for package BrowserViz
Execution halted
BrowserViz.Rcheck/00install.out:
* installing *source* package ‘BrowserViz’ ... ** R ** inst ** preparing package for lazy loading Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Note: the specification for S3 class “AsIs” in package ‘BiocGenerics’ seems equivalent to one from package ‘jsonlite’: not turning on duplicate class definitions for this class. * DONE (BrowserViz)
BrowserViz.Rcheck/BrowserViz-Ex.timings:
| name | user | system | elapsed |