BioC 3.2: CHECK report for BRAIN on moscato1

Package: BRAIN

Version: 1.15.0

Command: rm -rf BRAIN.buildbin-libdir BRAIN.Rcheck && mkdir BRAIN.buildbin-libdir BRAIN.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BRAIN.buildbin-libdir BRAIN_1.15.0.tar.gz >BRAIN.Rcheck\00install.out 2>&1 && cp BRAIN.Rcheck\00install.out BRAIN-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=BRAIN.buildbin-libdir --install="check:BRAIN-install.out" --force-multiarch --no-vignettes --timings BRAIN_1.15.0.tar.gz

StartedAt: 2015-08-20 02:00:44 -0700 (Thu, 20 Aug 2015)

EndedAt: 2015-08-20 02:02:53 -0700 (Thu, 20 Aug 2015)

EllapsedTime: 129.4 seconds

RetCode: 0

Status:  OK

CheckDir: BRAIN.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf BRAIN.buildbin-libdir BRAIN.Rcheck && mkdir BRAIN.buildbin-libdir BRAIN.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BRAIN.buildbin-libdir BRAIN_1.15.0.tar.gz >BRAIN.Rcheck\00install.out 2>&1 && cp BRAIN.Rcheck\00install.out BRAIN-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=BRAIN.buildbin-libdir --install="check:BRAIN-install.out" --force-multiarch --no-vignettes --timings BRAIN_1.15.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/BRAIN.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BRAIN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BRAIN' version '1.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BRAIN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biostrings'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/BRAIN.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'BRAIN' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BRAIN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BRAIN' as BRAIN_1.15.0.zip
* DONE (BRAIN)

name	user	system	elapsed
BRAIN-package	0.42	0.00	0.48
calculateAverageMass	0	0	0
calculateIsotopicProbabilities	0.09	0.00	0.09
calculateMonoisotopicMass	0	0	0
calculateNrPeaks	0.02	0.00	0.02
getAtomsFromSeq	0.01	0.00	0.01
useBRAIN	0.47	0.00	0.47

name	user	system	elapsed
BRAIN-package	0.47	0.00	1.09
calculateAverageMass	0	0	0
calculateIsotopicProbabilities	0.06	0.00	0.07
calculateMonoisotopicMass	0	0	0
calculateNrPeaks	0	0	0
getAtomsFromSeq	0.02	0.00	0.01
useBRAIN	0.33	0.00	0.33