Back to Build/check report for BioC 3.14 experimental data |
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This page was generated on 2022-04-13 14:50:22 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the cnvGSAdata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 67/408 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
cnvGSAdata 1.30.0 (landing page) Joseph Lugo
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: cnvGSAdata |
Version: 1.30.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:cnvGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings cnvGSAdata_1.30.0.tar.gz |
StartedAt: 2022-04-13 11:17:51 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 11:18:35 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 43.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: cnvGSAdata.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:cnvGSAdata.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings cnvGSAdata_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/cnvGSAdata.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cnvGSAdata/DESCRIPTION’ ... OK * this is package ‘cnvGSAdata’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cnvGSAdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 9.1Mb sub-directories of 1Mb or more: data 5.2Mb extdata 3.8Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress cnvGSA_input_example.RData 2.4Mb 1.2Mb xz cnvGSA_output_example.RData 2.5Mb 770Kb xz gs_data_example.RData 310Kb 207Kb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.14-data-experiment/meat/cnvGSAdata.Rcheck/00check.log’ for details.
cnvGSAdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL cnvGSAdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘cnvGSAdata’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cnvGSAdata)
cnvGSAdata.Rcheck/cnvGSAdata-Ex.timings
name | user | system | elapsed | |
cnv_AGP_demo.txt | 0.020 | 0.000 | 0.019 | |
enrGMT_AGP_demo.gmt | 1.397 | 0.212 | 1.609 | |
enrGeneric_AGP_demo.txt | 0.001 | 0.000 | 0.002 | |
gene_ID_demo.txt | 0.105 | 0.000 | 0.105 | |
kl_gene_AGP_demo.txt | 0.001 | 0.000 | 0.001 | |
kl_loci_AGP_demo.txt | 0.001 | 0.000 | 0.001 | |
ph_AGP_demo.txt | 0.008 | 0.000 | 0.009 | |