| Back to Long Tests report for BioC 3.14 |
This page was generated on 2022-04-09 21:00:03 -0400 (Sat, 09 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4322 |
| riesling1 | Windows Server 2019 Standard | x64 | 4.1.2 (2021-11-01) -- "Bird Hippie" | 4108 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4135 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rhdf5 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 17/19 | Hostname | OS / Arch | CHECK | |||||||
| rhdf5 2.38.1 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | |||||||
| riesling1 | Windows Server 2019 Standard / x64 | ERROR | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ||||||||
| Package: rhdf5 |
| Version: 2.38.1 |
| Command: D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no rhdf5_2.38.1.tar.gz |
| StartedAt: 2022-04-09 08:08:33 -0400 (Sat, 09 Apr 2022) |
| EndedAt: 2022-04-09 08:08:53 -0400 (Sat, 09 Apr 2022) |
| EllapsedTime: 20.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: rhdf5.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no rhdf5_2.38.1.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck'
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'rhdf5/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rhdf5' version '2.38.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rhdf5' can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.9Mb
sub-directories of 1Mb or more:
libs 7.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error: package 'rhdf5' is not installed for 'arch = i386'
Execution halted
** DONE
Status: 1 ERROR, 1 NOTE
See
'D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00check.log'
for details.
rhdf5.Rcheck/00install.out
* installing *source* package 'rhdf5' ... ** using staged installation ** libs Warning: this package has a non-empty 'configure.win' file, so building only the main architecture "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S_extras.c -o H5S_extras.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bit64conversion.c -o bit64conversion.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o "C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LD:/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5A.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5D.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5E.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5F.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5G.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5I.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5L.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5O.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5P.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5S.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5S_extras.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5T.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5Z.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/H5constants.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/HandleList.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/HandleListWrap.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/bit64conversion.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/external_filters.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5dump.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5ls.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5testLock.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/h5writeDataFrame.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/printdatatype.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/utils.o: file format not recognized C:\rtools40\mingw32\bin\nm.exe: D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00_pkg_src/rhdf5/src/wrap.o: file format not recognized There were 26 warnings (use warnings() to see them) installing to D:/biocbuild/bbs-3.14-bioc-longtests/meat/rhdf5.Rcheck/00LOCK-rhdf5/00new/rhdf5/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5)