Back to Multiple platform build/check report for BioC 3.14
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2022-04-13 12:07:22 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for simplifyEnrichment on tokay2


To the developers/maintainers of the simplifyEnrichment package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/simplifyEnrichment.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1803/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simplifyEnrichment 1.4.0  (landing page)
Zuguang Gu
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/simplifyEnrichment
git_branch: RELEASE_3_14
git_last_commit: 549d5f1
git_last_commit_date: 2021-10-26 13:00:10 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: simplifyEnrichment
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/simplifyEnrichment_1.4.0.tar.gz && rm -rf simplifyEnrichment.buildbin-libdir && mkdir simplifyEnrichment.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=simplifyEnrichment.buildbin-libdir simplifyEnrichment_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL simplifyEnrichment_1.4.0.zip && rm simplifyEnrichment_1.4.0.tar.gz simplifyEnrichment_1.4.0.zip
StartedAt: 2022-04-12 05:08:58 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:12:44 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 225.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/simplifyEnrichment_1.4.0.tar.gz && rm -rf simplifyEnrichment.buildbin-libdir && mkdir simplifyEnrichment.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=simplifyEnrichment.buildbin-libdir simplifyEnrichment_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL simplifyEnrichment_1.4.0.zip && rm simplifyEnrichment_1.4.0.tar.gz simplifyEnrichment_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1 16.7M    1  239k    0     0   581k      0  0:00:29 --:--:--  0:00:29  581k
  9 16.7M    9 1596k    0     0  1132k      0  0:00:15  0:00:01  0:00:14 1132k
 22 16.7M   22 3828k    0     0  1588k      0  0:00:10  0:00:02  0:00:08 1587k
 40 16.7M   40 6989k    0     0  2039k      0  0:00:08  0:00:03  0:00:05 2039k
 64 16.7M   64 10.7M    0     0  2495k      0  0:00:06  0:00:04  0:00:02 2495k
 93 16.7M   93 15.6M    0     0  2953k      0  0:00:05  0:00:05 --:--:-- 3148k
100 16.7M  100 16.7M    0     0  3062k      0  0:00:05  0:00:05 --:--:-- 3710k

install for i386

* installing *source* package 'simplifyEnrichment' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'simplifyEnrichment'
    finding HTML links ... done
    DO_similarity                           html  
    GO_similarity                           html  
    all_clustering_methods                  html  
    anno_word_cloud                         html  
    anno_word_cloud_from_GO                 html  
    binary_cut                              html  
    cluster_by_MCL                          html  
    cluster_by_apcluster                    html  
    cluster_by_dynamicTreeCut               html  
    cluster_by_hdbscan                      html  
    cluster_by_igraph                       html  
    cluster_by_kmeans                       html  
    cluster_by_mclust                       html  
    cluster_terms                           html  
    cmp_make_clusters                       html  
    cmp_make_plot                           html  
    compare_clustering_methods              html  
    count_word                              html  
    count_word_from_GO                      html  
    dend_node_apply                         html  
    difference_score                        html  
    edit_node                               html  
    export_to_shiny_app                     html  
    guess_ont                               html  
    heightDetails.word_cloud                html  
    ht_clusters                             html  
    partition_by_hclust                     html  
    partition_by_kmeans                     html  
    partition_by_kmeanspp                   html  
    partition_by_pam                        html  
    plot_binary_cut                         html  
    random_DO                               html  
    random_GO                               html  
    register_clustering_methods             html  
    remove_clustering_methods               html  
    reset_clustering_methods                html  
    scale_fontsize                          html  
    select_cutoff                           html  
    simplifyEnrichment                      html  
    simplifyGO                              html  
    simplifyGOFromMultipleLists             html  
    subset_enrichResult                     html  
    term_similarity                         html  
    term_similarity_from_KEGG               html  
    term_similarity_from_MSigDB             html  
    term_similarity_from_Reactome           html  
    term_similarity_from_enrichResult       html  
    term_similarity_from_gmt                html  
    widthDetails.word_cloud                 html  
    word_cloud_grob                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'simplifyEnrichment' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'simplifyEnrichment' as simplifyEnrichment_1.4.0.zip
* DONE (simplifyEnrichment)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'simplifyEnrichment' successfully unpacked and MD5 sums checked