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This page was generated on 2022-04-13 12:05:29 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for iClusterPlus on nebbiolo2


To the developers/maintainers of the iClusterPlus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/iClusterPlus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 907/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iClusterPlus 1.30.0  (landing page)
Qianxing Mo , Ronglai Shen
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/iClusterPlus
git_branch: RELEASE_3_14
git_last_commit: 37ea735
git_last_commit_date: 2021-10-26 12:11:34 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: iClusterPlus
Version: 1.30.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL iClusterPlus
StartedAt: 2022-04-12 03:13:38 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 03:13:53 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 14.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL iClusterPlus
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘iClusterPlus’ ...
** using staged installation
 This package has only been tested with gfortran.
 So some checks are needed.
 R_HOME is /home/biocbuild/bbs-3.14-bioc/R
Attempting to determine R_ARCH...
R_ARCH is 
Attempting to detect how R was configured for Fortran 90....
  R configured for gfortran; Good!
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function ‘mcmcBayes’:
iClusterBayes.c:1212:28: warning: variable ‘Zdraw’ set but not used [-Wunused-but-set-variable]
 1212 |   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
      |                            ^~~~~
iClusterBayes.c:1212:20: warning: variable ‘Zburnin’ set but not used [-Wunused-but-set-variable]
 1212 |   int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
      |                    ^~~~~~~
iClusterBayes.c:1446:13: warning: ‘gb4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1446 |     gb4[ID] = b4[ID]*gamma4[j];
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1431:13: warning: ‘gb3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1431 |     gb3[ID] = b3[ID]*gamma3[j];
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~
iClusterBayes.c:1368:6: warning: ‘gb2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1368 |      mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1369 |         &ty0,&p0,a0,gb0,con0,cat0,sigma0,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1370 |         &ty1,&p1,a1,gb1,con1,cat1,sigma1,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1371 |         &ty2,&p2,a2,gb2,con2,cat2,sigma2,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1372 |         &ty3,&p3,a3,gb3,con3,cat3,sigma3,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1373 |         &ty4,&p4,a4,gb4,con4,cat4,sigma4,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1374 |         &ty5,&p5,a5,gb5,con5,cat5,sigma5,acceptZ);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
iClusterBayes.c:1368:6: warning: ‘gb1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1368:6: warning: ‘gb0’ may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1461:13: warning: ‘gb5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1461 |     gb5[ID] = b5[ID]*gamma5[j];
      |     ~~~~~~~~^~~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c iClusterPlus.c -o iClusterPlus.o
gfortran -fno-optimize-sibling-calls -fdefault-real-8 -ffixed-form -fpic  -g -O2  -c  newGLMnet.f90 -o newGLMnet.o
gcc -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o iClusterPlus.so iClusterBayes.o iClusterPlus.o newGLMnet.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.14-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-iClusterPlus/00new/iClusterPlus/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘iClusterPlus.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iClusterPlus)