##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:Travel.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Travel_1.2.0.tar.gz
###
##############################################################################
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Travel.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Travel/DESCRIPTION' ... OK
* this is package 'Travel' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'Travel' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Travel/libs/x64/Travel.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
   1. \-parallel::clusterExport(cl, "x", environment()) at test_J_serialize.R:38:4
   2.   \-parallel::clusterCall(cl, gets, name, get(name, envir = envir))
   3.     +-parallel:::checkForRemoteErrors(lapply(cl, recvResult))
   4.     \-base::lapply(cl, recvResult)
   5.       \-parallel FUN(X[[i]], ...)
   6.         +-parallel:::recvData(con)
   7.         \-parallel:::recvData.SOCKnode(con)
   8.           \-base::unserialize(node$con)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 154 ]
  Error: Test failures
  In addition: Warning message:
  In .Internal(gc(verbose, reset, full)) :
    closing unused connection 5 (<-TOKAY2:11657)
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/Travel.Rcheck/00check.log'
for details.

##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch Travel
###
##############################################################################
##############################################################################


* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
* installing *source* package 'Travel' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Cpp_interface.cpp -o Cpp_interface.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c altfile_operations.cpp -o altfile_operations.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c altmmap_operations.cpp -o altmmap_operations.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c altrep_manager.cpp -o altrep_manager.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Cache_block.cpp -o class_Cache_block.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Filesystem_cache_copier.cpp -o class_Filesystem_cache_copier.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Filesystem_file_data.cpp -o class_Filesystem_file_data.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Memory_mapped.cpp -o class_Memory_mapped.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Protect_guard.cpp -o class_Protect_guard.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Subset_index.cpp -o class_Subset_index.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Timer.cpp -o class_Timer.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c class_Unique_buffer.cpp -o class_Unique_buffer.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c examples.cpp -o examples.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c filesystem_manager.cpp -o filesystem_manager.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c filesystem_operations_dokan.cpp -o filesystem_operations_dokan.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c filesystem_operations_fuse.cpp -o filesystem_operations_fuse.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c memory_mapped_file.cpp -o memory_mapped_file.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c profile.cpp -o profile.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c read_write_operations.cpp -o read_write_operations.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c unit_test_utils.cpp -o unit_test_utils.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c unit_tests.cpp -o unit_tests.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I"C:\Program Files\Dokan\Dokan Library-1.5.0\include" -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o Travel.dll tmp.def Cpp_interface.o RcppExports.o altfile_operations.o altmmap_operations.o altrep_manager.o class_Cache_block.o class_Filesystem_cache_copier.o class_Filesystem_file_data.o class_Memory_mapped.o class_Protect_guard.o class_Subset_index.o class_Timer.o class_Unique_buffer.o examples.o filesystem_manager.o filesystem_operations_dokan.o filesystem_operations_fuse.o memory_mapped_file.o profile.o read_write_operations.o unit_test_utils.o unit_tests.o utils.o -LC:\Program Files\Dokan\Dokan Library-1.5.0\lib -ldokan1 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/R/library/00LOCK-Travel/00new/Travel/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Travel'
    finding HTML links ... done
    filesystem                              html  
    wrap_altrep                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Travel)
Making 'packages.html' ... done

R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Travel)
> 
> test_check("Travel")
The altmmap handle has been released: inode_12, handle: 0x00000000047ceb50
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 154 ]

== Failed tests ================================================================
-- Error (test_J_serialize.R:38:5): export int sequence with customized function --
Error in `unserialize(node$con)`: error reading from connection
Backtrace:
    x
 1. \-parallel::clusterExport(cl, "x", environment()) at test_J_serialize.R:38:4
 2.   \-parallel::clusterCall(cl, gets, name, get(name, envir = envir))
 3.     +-parallel:::checkForRemoteErrors(lapply(cl, recvResult))
 4.     \-base::lapply(cl, recvResult)
 5.       \-parallel FUN(X[[i]], ...)
 6.         +-parallel:::recvData(con)
 7.         \-parallel:::recvData.SOCKnode(con)
 8.           \-base::unserialize(node$con)

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 154 ]
Error: Test failures
In addition: Warning message:
In .Internal(gc(verbose, reset, full)) :
  closing unused connection 5 (<-TOKAY2:11657)
Execution halted