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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TTMap.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings TTMap_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/TTMap.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TTMap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TTMap' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TTMap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
calcul_e                            12.41   0.80   13.20
hyperrectangle_deviation_assessment 12.26   0.07   12.34
ttmap_sgn_genes                     12.05   0.11   12.28
ttmap                               11.58   0.18   11.75
control_adjustment                   9.29   0.05    9.34
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
ttmap_sgn_genes                     16.72   0.13   16.88
calcul_e                            15.18   0.24   15.45
hyperrectangle_deviation_assessment 13.72   0.15   13.91
ttmap                               13.47   0.08   13.55
control_adjustment                  13.19   0.07   13.47
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TTMap_1.16.0.tar.gz && rm -rf TTMap.buildbin-libdir && mkdir TTMap.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TTMap.buildbin-libdir TTMap_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TTMap_1.16.0.zip && rm TTMap_1.16.0.tar.gz TTMap_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 37  361k   37  134k    0     0   444k      0 --:--:-- --:--:-- --:--:--  444k
100  361k  100  361k    0     0   409k      0 --:--:-- --:--:-- --:--:--  409k

install for i386

* installing *source* package 'TTMap' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TTMap'
    finding HTML links ... done
    TTMap-package                           html  
    calcul_e                                html  
    control_adjustment                      html  
    generate_correlation                    html  
    hyperrectangle_deviation_assessment     html  
    make_matrices-methods                   html  
    make_matrices                           html  
    finding level-2 HTML links ... done

    ttmap                                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/TTMap.buildbin-libdir/00LOCK-TTMap/00new/TTMap/help/ttmap.html
    ttmap_sgn_genes                         html  
    write_pcl                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TTMap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TTMap' as TTMap_1.16.0.zip
* DONE (TTMap)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'TTMap' successfully unpacked and MD5 sums checked