| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:27 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TAPseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/TAPseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1929/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TAPseq 1.6.0 (landing page) Andreas R. Gschwind
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: TAPseq |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TAPseq_1.6.0.tar.gz && rm -rf TAPseq.buildbin-libdir && mkdir TAPseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TAPseq.buildbin-libdir TAPseq_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TAPseq_1.6.0.zip && rm TAPseq_1.6.0.tar.gz TAPseq_1.6.0.zip |
| StartedAt: 2022-04-12 06:41:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:43:41 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 142.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TAPseq_1.6.0.tar.gz && rm -rf TAPseq.buildbin-libdir && mkdir TAPseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TAPseq.buildbin-libdir TAPseq_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TAPseq_1.6.0.zip && rm TAPseq_1.6.0.tar.gz TAPseq_1.6.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
50 2018k 50 1011k 0 0 1175k 0 0:00:01 --:--:-- 0:00:01 1175k
100 2018k 100 2018k 0 0 1464k 0 0:00:01 0:00:01 --:--:-- 1465k
install for i386
* installing *source* package 'TAPseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TAPseq'
finding HTML links ... done
TAPseq html
TAPseqInput html
TsIO-class html
TsIOList-class html
accessors html
bone_marrow_genex html
checkPrimers html
check_tool_installation html
chr11_genes html
chr11_polyA_sites html
chr11_primers html
chr11_truncated_txs html
chr11_truncated_txs_seq html
createIORecord html
designPrimers html
estimateOffTargets html
exportPrimers html
getTxsSeq html
get_gt_sequences html
inferPolyASites html
parsePrimer3Output html
pickPrimers html
selectTargetGenes html
truncateTxsPolyA html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Following software required by TAPseq is not installed or not in PATH:
primer3_core
makeblastdb
blastn
Please install these tools before trying to use this package!
** testing if installed package can be loaded from final location
Warning: Following software required by TAPseq is not installed or not in PATH:
primer3_core
makeblastdb
blastn
Please install these tools before trying to use this package!
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TAPseq' ...
** testing if installed package can be loaded
Warning: Following software required by TAPseq is not installed or not in PATH:
primer3_core
makeblastdb
blastn
Please install these tools before trying to use this package!
* MD5 sums
packaged installation of 'TAPseq' as TAPseq_1.6.0.zip
* DONE (TAPseq)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'TAPseq' successfully unpacked and MD5 sums checked