Michael Skinnider
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/PrInCE |
| git_branch: RELEASE_3_14 |
| git_last_commit: d2e07dc |
| git_last_commit_date: 2021-10-26 12:49:58 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:07 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the PrInCE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/PrInCE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1456/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PrInCE 1.10.0 (landing page) Michael Skinnider
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: PrInCE |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings PrInCE_1.10.0.tar.gz |
| StartedAt: 2022-04-13 00:47:49 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 00:53:35 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 346.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: PrInCE.Rcheck |
| Warnings: 1 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:PrInCE.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings PrInCE_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/PrInCE.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PrInCE/DESCRIPTION' ... OK
* this is package 'PrInCE' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.lintr
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'PrInCE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
calculate_features: no visible global function definition for
'quantile'
Undefined global functions or variables:
quantile
Consider adding
importFrom("stats", "quantile")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'calculate_autocorrelation'
'min_replicates'
Undocumented arguments in documentation object 'calculate_features'
'n_pairs'
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
calculate_precision 6.15 0.22 6.38
PrInCE 5.45 0.17 5.63
predict_interactions 4.90 0.19 5.10
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PrInCE 5.03 0.19 5.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/PrInCE.Rcheck/00check.log'
for details.
PrInCE.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PrInCE_1.10.0.tar.gz && rm -rf PrInCE.buildbin-libdir && mkdir PrInCE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PrInCE.buildbin-libdir PrInCE_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PrInCE_1.10.0.zip && rm PrInCE_1.10.0.tar.gz PrInCE_1.10.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
40 1811k 40 740k 0 0 1238k 0 0:00:01 --:--:-- 0:00:01 1238k
100 1811k 100 1811k 0 0 1617k 0 0:00:01 0:00:01 --:--:-- 1618k
install for i386
* installing *source* package 'PrInCE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
Loading required namespace: PrInCE
Registered S3 method overwritten by 'quantmod':
method from
as.zoo.data.frame zoo
*** installing help indices
converting help for package 'PrInCE'
finding HTML links ... done
PrInCE html
finding level-2 HTML links ... done
adjacency_matrix_from_data_frame html
adjacency_matrix_from_list html
aic html
build_gaussians html
calculate_autocorrelation html
calculate_features html
calculate_precision html
check_gaussians html
choose_gaussians html
clean_profile html
clean_profiles html
co_apex html
concatenate_features html
detect_complexes html
filter_profiles html
fit_curve html
fit_gaussians html
gold_standard html
impute_neighbors html
is_unweighted html
is_weighted html
kristensen html
kristensen_gaussians html
make_feature_from_data_frame html
make_feature_from_expression html
make_initial_conditions html
make_labels html
match_matrix_dimensions html
predict_ensemble html
predict_interactions html
replace_missing_data html
scott html
scott_gaussians html
threshold_precision html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PrInCE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PrInCE' as PrInCE_1.10.0.zip
* DONE (PrInCE)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'PrInCE' successfully unpacked and MD5 sums checked
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PrInCE.Rcheck/examples_i386/PrInCE-Ex.timings
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PrInCE.Rcheck/examples_x64/PrInCE-Ex.timings
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