Olivier Gevaert
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/MethylMix |
| git_branch: RELEASE_3_14 |
| git_last_commit: 6ec065d |
| git_last_commit_date: 2021-10-26 12:15:36 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:52 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MethylMix package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/MethylMix.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1123/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MethylMix 2.24.0 (landing page) Olivier Gevaert
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MethylMix |
| Version: 2.24.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MethylMix_2.24.0.tar.gz && rm -rf MethylMix.buildbin-libdir && mkdir MethylMix.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MethylMix.buildbin-libdir MethylMix_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MethylMix_2.24.0.zip && rm MethylMix_2.24.0.tar.gz MethylMix_2.24.0.zip |
| StartedAt: 2022-04-12 04:49:16 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:50:40 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 83.9 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MethylMix_2.24.0.tar.gz && rm -rf MethylMix.buildbin-libdir && mkdir MethylMix.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MethylMix.buildbin-libdir MethylMix_2.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MethylMix_2.24.0.zip && rm MethylMix_2.24.0.tar.gz MethylMix_2.24.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
24 2582k 24 643k 0 0 1428k 0 0:00:01 --:--:-- 0:00:01 1429k
100 2582k 100 2582k 0 0 2232k 0 0:00:01 0:00:01 --:--:-- 2234k
install for i386
* installing *source* package 'MethylMix' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MethylMix'
finding HTML links ... done
BatchData html
ClusterProbes html
ComBat_NoFiles html
Download_DNAmethylation html
Download_GeneExpression html
GEcancer html
GetData html
METcancer html
METnormal html
MethylMix html
MethylMix_MixtureModel html
MethylMix_ModelGeneExpression html
MethylMix_ModelSingleGene html
MethylMix_PlotModel html
MethylMix_Predict html
MethylMix_RemoveFlipOver html
Preprocess_CancerSite_Methylation27k html
Preprocess_CancerSite_Methylation450k html
Preprocess_DNAmethylation html
Preprocess_GeneExpression html
Preprocess_MAdata_Cancer html
Preprocess_MAdata_Normal html
ProbeAnnotation html
SNPprobes html
TCGA_BatchCorrection_MolecularData html
TCGA_GENERIC_BatchCorrection html
TCGA_GENERIC_CheckBatchEffect html
TCGA_GENERIC_CleanUpSampleNames html
TCGA_GENERIC_GetSampleGroups html
TCGA_GENERIC_LoadIlluminaMethylationData
html
TCGA_GENERIC_MET_ClusterProbes_Helper_ClusterGenes_with_hclust
html
TCGA_GENERIC_MergeData html
TCGA_Load_MolecularData html
TCGA_Process_EstimateMissingValues html
betaEst_2 html
blc_2 html
combineForEachOutput html
get_firehoseData html
predictOneGene html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MethylMix' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MethylMix' as MethylMix_2.24.0.zip
* DONE (MethylMix)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MethylMix' successfully unpacked and MD5 sums checked