Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:08:07 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GSgalgoR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/GSgalgoR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 837/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GSgalgoR 1.4.0 (landing page) Carlos Catania
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GSgalgoR |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:GSgalgoR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings GSgalgoR_1.4.0.tar.gz |
StartedAt: 2022-04-12 14:06:33 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 14:10:22 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 229.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSgalgoR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:GSgalgoR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings GSgalgoR_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/GSgalgoR.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GSgalgoR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GSgalgoR’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSgalgoR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_pareto 3.825 0.121 9.013 callback_base_report 2.922 0.225 8.741 classify_multiple 2.769 0.169 8.834 non_dominated_summary 2.729 0.062 8.042 create_centroids 2.609 0.059 7.875 to_list 2.406 0.044 7.703 to_dataframe 2.338 0.045 7.428 galgo 2.053 0.039 7.244 callback_base_return_pop 1.972 0.115 7.810 callback_default 1.978 0.108 7.883 callback_no_report 1.938 0.127 8.076 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
GSgalgoR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GSgalgoR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘GSgalgoR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSgalgoR)
GSgalgoR.Rcheck/tests/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(GSgalgoR) > > test_check("GSgalgoR") .......... k rnkIndex CrowD result.1 8 0.02212350 201.10126 1 Inf result.3 9 0.02402496 160.41638 1 1.37352 result.4 8 0.03651880 48.37265 1 Inf k rnkIndex CrowD result.1 8 0.02212350 201.10126 1 Inf result.3 2 0.11803624 30.01863 1 Inf result.4 4 0.04509859 173.43985 1 1.798893 ......[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 24.216 1.479 94.734
GSgalgoR.Rcheck/GSgalgoR-Ex.timings
name | user | system | elapsed | |
calculate_distance | 2.791 | 0.127 | 2.922 | |
callback_base_report | 2.922 | 0.225 | 8.741 | |
callback_base_return_pop | 1.972 | 0.115 | 7.810 | |
callback_default | 1.978 | 0.108 | 7.883 | |
callback_no_report | 1.938 | 0.127 | 8.076 | |
classify_multiple | 2.769 | 0.169 | 8.834 | |
cluster_algorithm | 1.285 | 0.042 | 1.328 | |
cluster_classify | 0.815 | 0.122 | 0.938 | |
cosine_similarity | 0.001 | 0.000 | 0.001 | |
create_centroids | 2.609 | 0.059 | 7.875 | |
galgo | 2.053 | 0.039 | 7.244 | |
k_centroids | 1.334 | 0.037 | 1.372 | |
non_dominated_summary | 2.729 | 0.062 | 8.042 | |
plot_pareto | 3.825 | 0.121 | 9.013 | |
surv_fitness | 0.960 | 0.027 | 0.987 | |
to_dataframe | 2.338 | 0.045 | 7.428 | |
to_list | 2.406 | 0.044 | 7.703 | |