Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:35 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GCSConnection package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/GCSConnection.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 706/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GCSConnection 1.6.0 (landing page) Jiefei Wang
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
Package: GCSConnection |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GCSConnection.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings GCSConnection_1.6.0.tar.gz |
StartedAt: 2022-04-12 20:03:40 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 20:07:33 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 233.4 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: GCSConnection.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GCSConnection.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings GCSConnection_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'GCSConnection/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'GCSConnection' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GCSConnection' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files for i386 is not available Note: information on .o files for x64 is not available File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/GCSConnection/libs/i386/GCSConnection.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/GCSConnection/libs/x64/GCSConnection.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) File 'GCSConnection/libs/i386/GCSConnection.dll': Found non-API call to R: 'R_new_custom_connection' File 'GCSConnection/libs/x64/GCSConnection.dll': Found non-API call to R: 'R_new_custom_connection' Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). Either you do not have the access rights, or you have sent an invalid billing project Backtrace: x 1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4 2. | \-testthat::quasi_label(enquo(object), label, arg = "object") 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp") 5. \-GCSConnection:::.is_requester_pays(bucket) 6. \-GCSConnection:::catch_error(r) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted ** running tests for arch 'x64' ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). Either you do not have the access rights, or you have sent an invalid billing project Backtrace: x 1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4 2. | \-testthat::quasi_label(enquo(object), label, arg = "object") 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp") 5. \-GCSConnection:::.is_requester_pays(bucket) 6. \-GCSConnection:::catch_error(r) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.Rcheck/00check.log' for details.
GCSConnection.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GCSConnection_1.6.0.tar.gz && rm -rf GCSConnection.buildbin-libdir && mkdir GCSConnection.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GCSConnection.buildbin-libdir GCSConnection_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GCSConnection_1.6.0.zip && rm GCSConnection_1.6.0.tar.gz GCSConnection_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 36474 100 36474 0 0 307k 0 --:--:-- --:--:-- --:--:-- 309k install for i386 * installing *source* package 'GCSConnection' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_interface.cpp -o C_interface.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrep.cpp -o altrep.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c connection.cpp -o connection.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o GCSConnection.dll tmp.def C_interface.o RcppExports.o altrep.o connection.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.buildbin-libdir/00LOCK-GCSConnection/00new/GCSConnection/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GCSConnection' finding HTML links ... done FileClass-class html FolderClass-class html as.character-FileClass-method html as.character-FolderClass-method html authentication html buffer_size html gcs_connection html gcs_cp html gcs_dir html gcs_rm html names-FileClass-method html names-FolderClass-method html requester_pays html show-FileClass-method html show-FolderClass-method html subset-FileClass-method html subset-FolderClass-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GCSConnection' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_interface.cpp -o C_interface.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrep.cpp -o altrep.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c connection.cpp -o connection.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.cpp -o utils.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o GCSConnection.dll tmp.def C_interface.o RcppExports.o altrep.o connection.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.buildbin-libdir/GCSConnection/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GCSConnection' as GCSConnection_1.6.0.zip * DONE (GCSConnection) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GCSConnection' successfully unpacked and MD5 sums checked
GCSConnection.Rcheck/tests_i386/testthat.Rout.fail R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(GCSConnection) > > test_check("GCSConnection") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ] == Failed tests ================================================================ -- Error (test_credentials.R:21:5): requester pays ----------------------------- Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). Either you do not have the access rights, or you have sent an invalid billing project Backtrace: x 1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4 2. | \-testthat::quasi_label(enquo(object), label, arg = "object") 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp") 5. \-GCSConnection:::.is_requester_pays(bucket) 6. \-GCSConnection:::catch_error(r) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted |
GCSConnection.Rcheck/tests_x64/testthat.Rout.fail R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(GCSConnection) > > test_check("GCSConnection") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ] == Failed tests ================================================================ -- Error (test_credentials.R:21:5): requester pays ----------------------------- Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). Either you do not have the access rights, or you have sent an invalid billing project Backtrace: x 1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4 2. | \-testthat::quasi_label(enquo(object), label, arg = "object") 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp") 5. \-GCSConnection:::.is_requester_pays(bucket) 6. \-GCSConnection:::catch_error(r) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ] Error: Test failures Execution halted |
GCSConnection.Rcheck/examples_i386/GCSConnection-Ex.timings
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GCSConnection.Rcheck/examples_x64/GCSConnection-Ex.timings
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