| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:30 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ELMER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/ELMER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 572/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ELMER 2.18.0 (landing page) Tiago Chedraoui Silva
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ELMER |
| Version: 2.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ELMER_2.18.0.tar.gz && rm -rf ELMER.buildbin-libdir && mkdir ELMER.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ELMER.buildbin-libdir ELMER_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ELMER_2.18.0.zip && rm ELMER_2.18.0.tar.gz ELMER_2.18.0.zip |
| StartedAt: 2022-04-12 07:23:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:25:23 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 124.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ELMER_2.18.0.tar.gz && rm -rf ELMER.buildbin-libdir && mkdir ELMER.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ELMER.buildbin-libdir ELMER_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ELMER_2.18.0.zip && rm ELMER_2.18.0.tar.gz ELMER_2.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 2930k 3 114k 0 0 494k 0 0:00:05 --:--:-- 0:00:05 495k
52 2930k 52 1542k 0 0 1254k 0 0:00:02 0:00:01 0:00:01 1254k
100 2930k 100 2930k 0 0 1567k 0 0:00:01 0:00:01 --:--:-- 1567k
install for i386
* installing *source* package 'ELMER' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ELMER'
finding HTML links ... done
ELMER html
Get.Pvalue.p html
GetNearGenes html
Stat.diff.meth html
Stat.nonpara html
Stat.nonpara.permu html
TCGA.pipe html
TF.rank.plot html
TFsurvival.plot html
addDistNearestTSS html
addMutCol html
calcDistNearestTSS html
calculateEnrichement html
createBigWigDNAmetArray html
createIGVtrack html
createMAE html
createMotifRelevantTfs html
createSummaryDocument html
createTSVTemplates html
findMotifRegion html
get.TFs html
get.diff.meth html
get.enriched.motif html
get.feature.probe html
get.pair html
get.permu html
get.tab html
get.tabs html
get450K html
getClinic html
getExp html
getExpSamples html
getGeneID html
getMet html
getMetSamples html
getRNAseq html
getRandomPairs html
getRegionNearGenes html
getSymbol html
getTCGA html
getTF html
getTFBindingSites html
getTFtargets html
getTSS html
heatmapGene html
heatmapPairs html
lm_eqn html
metBoxPlot html
motif.enrichment.plot html
preAssociationProbeFiltering html
promoterMeth html
render_report html
scatter html
scatter.plot html
schematic.plot html
summarizeTF html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ELMER' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ELMER' as ELMER_2.18.0.zip
* DONE (ELMER)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ELMER' successfully unpacked and MD5 sums checked