| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:28 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the DMRcaller package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/DMRcaller.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 525/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DMRcaller 1.26.0 (landing page) Nicolae Radu Zabet
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DMRcaller |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DMRcaller_1.26.0.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.26.0.zip && rm DMRcaller_1.26.0.tar.gz DMRcaller_1.26.0.zip |
| StartedAt: 2022-04-12 04:53:55 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:55:31 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 96.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DMRcaller_1.26.0.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.26.0.zip && rm DMRcaller_1.26.0.tar.gz DMRcaller_1.26.0.zip
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install for i386
* installing *source* package 'DMRcaller' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DMRcaller'
finding HTML links ... done
DMRcaller html
finding level-2 HTML links ... done
DMRsNoiseFilterCG html
GEs html
analyseReadsInsideRegionsForCondition html
computeDMRs html
computeDMRsReplicates html
computeMethylationDataCoverage html
computeMethylationDataSpatialCorrelation
html
computeMethylationProfile html
computeOverlapProfile html
extractGC html
filterDMRs html
getWholeChromosomes html
joinReplicates html
mergeDMRsIteratively html
methylationDataList html
plotLocalMethylationProfile html
plotMethylationDataCoverage html
plotMethylationDataSpatialCorrelation html
plotMethylationProfile html
plotMethylationProfileFromData html
plotOverlapProfile html
poolMethylationDatasets html
poolTwoMethylationDatasets html
readBismark html
readBismarkPool html
saveBismark html
syntheticDataReplicates html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DMRcaller' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DMRcaller' as DMRcaller_1.26.0.zip
* DONE (DMRcaller)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'DMRcaller' successfully unpacked and MD5 sums checked