Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CAGEfightR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/CAGEfightR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 235/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CAGEfightR 1.14.0 (landing page) Malte Thodberg
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CAGEfightR |
Version: 1.14.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CAGEfightR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CAGEfightR_1.14.0.tar.gz |
StartedAt: 2022-04-12 16:44:27 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 16:54:32 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 605.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CAGEfightR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CAGEfightR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CAGEfightR_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CAGEfightR.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CAGEfightR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CAGEfightR' version '1.14.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CAGEfightR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed findLinks 4.73 0.11 40.45 trimToPercentiles 4.55 0.02 5.33 trackLinks 2.11 0.07 21.48 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed findLinks 5.55 0.1 44.23 trackLinks 2.32 0.1 21.72 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CAGEfightR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CAGEfightR_1.14.0.tar.gz && rm -rf CAGEfightR.buildbin-libdir && mkdir CAGEfightR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEfightR.buildbin-libdir CAGEfightR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CAGEfightR_1.14.0.zip && rm CAGEfightR_1.14.0.tar.gz CAGEfightR_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 55 2312k 55 1273k 0 0 1481k 0 0:00:01 --:--:-- 0:00:01 1482k 100 2312k 100 2312k 0 0 1445k 0 0:00:01 0:00:01 --:--:-- 1446k install for i386 * installing *source* package 'CAGEfightR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CAGEfightR' finding HTML links ... done assignGeneID html assignMissingID html assignTxID html assignTxType html balanceBC html balanceD html bwCommonGenome html bwGenomeCompatibility html bwValid html calcBidirectionality html calcComposition html calcPooled html calcShape html calcSupport html calcTPM html calcTotalTags html checkCTSSs html checkPeaked html checkPooled html clusterBidirectionally html clusterUnidirectionally html combineClusters html convertBAM2BigWig html convertBED2BigWig html convertGRanges2GPos html exampleDesign html findLinks html findStretches html quantifyCTSSs html quantifyCTSSs2 html quantifyClusters html quantifyGenes html quickEnhancers html quickGenes html quickTSSs html shapeEntropy html shapeIQR html shapeMean html shapeMultimodality html subsetByBidirectionality html subsetByComposition html subsetBySupport html swapRanges html swapScores html trackBalance html trackCTSS html trackClusters html trackLinks html trimToPeak html trimToPercentiles html tuneTagClustering html utilsAggregateRows html utilsDeStrand html utilsScoreOverlaps html utilsSimplifyTxDb html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CAGEfightR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CAGEfightR' as CAGEfightR_1.14.0.zip * DONE (CAGEfightR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CAGEfightR' successfully unpacked and MD5 sums checked
CAGEfightR.Rcheck/examples_i386/CAGEfightR-Ex.timings
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CAGEfightR.Rcheck/examples_x64/CAGEfightR-Ex.timings
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