Matt Stone
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/BayesSpace |
| git_branch: RELEASE_3_14 |
| git_last_commit: c421c9d |
| git_last_commit_date: 2021-11-09 17:29:11 -0400 (Tue, 09 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:12 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the BayesSpace package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/BayesSpace.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 125/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BayesSpace 1.4.1 (landing page) Matt Stone
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BayesSpace |
| Version: 1.4.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BayesSpace_1.4.1.tar.gz && rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesSpace.buildbin-libdir BayesSpace_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BayesSpace_1.4.1.zip && rm BayesSpace_1.4.1.tar.gz BayesSpace_1.4.1.zip |
| StartedAt: 2022-04-12 05:59:23 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:01:53 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 150.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BayesSpace_1.4.1.tar.gz && rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BayesSpace.buildbin-libdir BayesSpace_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BayesSpace_1.4.1.zip && rm BayesSpace_1.4.1.tar.gz BayesSpace_1.4.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
6 717k 6 45689 0 0 292k 0 0:00:02 --:--:-- 0:00:02 293k
100 717k 100 717k 0 0 851k 0 --:--:-- --:--:-- --:--:-- 851k
install for i386
* installing *source* package 'BayesSpace' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cluster.cpp -o cluster.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BayesSpace.buildbin-libdir/00LOCK-BayesSpace/00new/BayesSpace/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BayesSpace'
finding HTML links ... done
BayesSpace html
Mode html
cluster html
clusterPlot html
deconvolve html
dot-adjust_hex_centers html
dot-bsData html
dot-clean_chain html
dot-compute_interspot_distances html
dot-find_neighbors html
dot-flatten_matrix_list html
dot-infer_param_dims html
dot-init_cluster html
dot-make_hex_spots html
dot-make_index_names html
dot-make_spot_vertices html
dot-make_square_spots html
dot-make_subspot_coldata html
dot-make_subspot_offsets html
dot-make_triangle_subspots html
dot-make_vertices html
dot-prepare_inputs html
dot-read_chain html
dot-select_spot_positions html
dot-select_subspot_positions html
enhanceFeatures html
exampleSCE html
featurePlot html
find_neighbors html
getRDS html
mcmcChain html
qTune html
readVisium html
spatialCluster html
spatialEnhance html
spatialPlot html
spatialPreprocess html
finding level-2 HTML links ... done
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BayesSpace' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppDist/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cluster.cpp -o cluster.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BayesSpace.dll tmp.def RcppExports.o cluster.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BayesSpace.buildbin-libdir/BayesSpace/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BayesSpace' as BayesSpace_1.4.1.zip
* DONE (BayesSpace)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BayesSpace' successfully unpacked and MD5 sums checked