BioC experimental data: CHECK report for pRolocdata on perceval

Package: pRolocdata

Version: 1.4.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch pRolocdata_1.4.1.tar.gz

StartedAt: 2015-04-08 10:28:05 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 10:32:44 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 279.7 seconds

RetCode: 0

Status:  OK

CheckDir: pRolocdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch pRolocdata_1.4.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file path:
  pRolocdata/inst/extdata/E14TG2a_2011/E14TG2a_2011_12_relaxedsettings/E14TG2a_2011_12_1p2_proteins.csv

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [24s/28s] OK
* checking installed package size ... NOTE
  installed size is 40.8Mb
  sub-directories of 1Mb or more:
    data      2.0Mb
    extdata  38.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
pRolocmetadata: no visible global function definition for
  ‘experimentData’
pRolocmetadata: no visible global function definition for ‘pubMedIds’
pRolocmetadata: no visible global function definition for ‘otherInfo’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [34s/36s] OK
Examples with CPU or elapsed time > 5s
            user system elapsed
hall2009  11.449  0.377  12.843
groen2014  6.417  0.051   6.508
* checking PDF version of manual ... OK
* DONE

NOTE: There were 3 notes.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

name	user	system	elapsed
E14TG2a	0.038	0.007	0.178
andy2011	0.036	0.006	0.043
at_chloro	0.171	0.015	0.187
dunkley2006	0.021	0.006	0.026
foster2006	0.353	0.007	0.366
groen2014	6.417	0.051	6.508
hall2009	11.449	0.377	12.843
nikolovski2012	1.630	0.056	1.729
nikolovski2014	0.971	0.049	1.080
pRolocdata	0.012	0.019	0.149
pRolocmetadata	0.023	0.011	0.035
tan2009	0.027	0.007	0.034
trotter2010	0.844	0.037	1.150