BioC experimental data: CHECK report for cMap2data on perceval

Package: cMap2data

Version: 1.1.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cMap2data_1.1.1.tar.gz

StartedAt: 2015-04-08 09:13:04 -0700 (Wed, 08 Apr 2015)

EndedAt: 2015-04-08 09:14:46 -0700 (Wed, 08 Apr 2015)

EllapsedTime: 101.7 seconds

RetCode: 0

Status:  OK

CheckDir: cMap2data.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cMap2data_1.1.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/cMap2data.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cMap2data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cMap2data’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cMap2data’ can be installed ... [34s/65s] OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: cMap2data-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-3.0-data-experiment/meat/cMap2data.Rcheck/00check.log’
for details.

* installing *source* package ‘cMap2data’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cMap2data)

name	user	system	elapsed
cMap2data-package	0.029	0.006	0.035
cytodrug	0.002	0.000	0.002
drugClusters	0.001	0.000	0.002
drugRL	0.002	0.000	0.003
druglabels	0.002	0.000	0.003
genelist	0.002	0.000	0.003