LiebermanAidenHiC2009 0.3.1
Felix Klein
| Snapshot Date: 2015-04-08 06:15:26 -0700 (Wed, 08 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_0/experiment/pkgs/LiebermanAidenHiC2009 | | Last Changed Rev: 3075 / Revision: 3266 | | Last Changed Date: 2014-10-13 14:52:40 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK |
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### Running command:
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### rm -rf LiebermanAidenHiC2009.buildbin-libdir LiebermanAidenHiC2009.Rcheck && mkdir LiebermanAidenHiC2009.buildbin-libdir LiebermanAidenHiC2009.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LiebermanAidenHiC2009.buildbin-libdir LiebermanAidenHiC2009_0.3.1.tar.gz >LiebermanAidenHiC2009.Rcheck\00install.out 2>&1 && cp LiebermanAidenHiC2009.Rcheck\00install.out LiebermanAidenHiC2009-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=LiebermanAidenHiC2009.buildbin-libdir --install="check:LiebermanAidenHiC2009-install.out" --force-multiarch --no-vignettes --timings LiebermanAidenHiC2009_0.3.1.tar.gz
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* using log directory 'D:/biocbld/bbs-3.0-data-experiment/meat/LiebermanAidenHiC2009.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LiebermanAidenHiC2009/DESCRIPTION' ... OK
* this is package 'LiebermanAidenHiC2009' version '0.3.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LiebermanAidenHiC2009' can be installed ... OK
* checking installed package size ... NOTE
installed size is 10.4Mb
sub-directories of 1Mb or more:
data 9.2Mb
doc 1.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
'DNAse1.df' 'DNAse2.df' 'H3K27me3.df' 'H3K36me3.df' 'HiC_GM_chr14'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
ChipSeqData.RData 203Kb 117Kb xz
HiC_GM_chr14.RData 9.0Mb 6.0Mb xz
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
WARNING: There were 2 warnings.
NOTE: There was 1 note.
See
'D:/biocbld/bbs-3.0-data-experiment/meat/LiebermanAidenHiC2009.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'LiebermanAidenHiC2009' ...
** data
** inst
** help
No man pages found in package 'LiebermanAidenHiC2009'
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'LiebermanAidenHiC2009' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LiebermanAidenHiC2009' as LiebermanAidenHiC2009_0.3.1.zip
* DONE (LiebermanAidenHiC2009)