Package: yeastRNASeq

Version: 0.0.5

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings yeastRNASeq_0.0.5.tar.gz

StartedAt: 2012-03-23 14:15:01 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 14:22:05 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 424.1 seconds

RetCode: 0

Status:  OK

CheckDir: yeastRNASeq.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-data-experiment/meat/yeastRNASeq.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastRNASeq/DESCRIPTION’ ... OK
* this is package ‘yeastRNASeq’ version ‘0.0.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘yeastRNASeq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 313.7Mb
  sub-directories of 1Mb or more:
    data    62.7Mb
    reads  250.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                    old_size new_size compress
  geneLevelData.rda     68Kb     43Kb    bzip2
  yeastAligned.rda    62.6Mb   44.3Mb       xz
  yeastAnno.rda         80Kb     57Kb       xz
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘yeastRNASeq’ ...
** data
** inst
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘yeastRNASeq.Rnw’ 
** testing if installed package can be loaded

* DONE (yeastRNASeq)