Package: ppiData

Version: 0.1.14

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ppiData_0.1.14.tar.gz

StartedAt: 2011-07-06 16:12:02 -0700 (Wed, 06 Jul 2011)

EndedAt: 2011-07-06 16:13:26 -0700 (Wed, 06 Jul 2011)

EllapsedTime: 83.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ppiData.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.9-data-experiment/meat/ppiData.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
               size ASCII compress
  ppipred.rda 896Kb FALSE     none
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.9-data-experiment/meat/ppiData.Rcheck/00check.log'
for details

* installing *source* package 'ppiData' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ppiStats.Rnw' 
** testing if installed package can be loaded

* DONE (ppiData)

name	user	system	elapsed
Cagney2001BPGraph	0	0	0
Gavin2002BPGraph	0.02	0.00	0.02
Gavin2006bPGraph	0	0	0
Hazbun2003BPGraph	0	0	0
Ho2002BPGraph	0	0	0
Ito2001BPGraph	0	0	0
ItoCore2001BPGraph	0.00	0.00	0.24
ItoFull2001BPGraph	0	0	0
Krogan2004BPGraph	0.00	0.00	0.01
Krogan2006BPGraph	0.00	0.00	0.02
Tong2002BPGraph	0	0	0
Uetz2000BPGraph1	0	0	0
Uetz2000BPGraph2	0	0	0
Zhao2005BPGraph	0	0	0
bpExperimentNames	0.00	0.00	0.91
collectIntactPPIData	13.94	0.00	15.14
createBPList	0.01	0.00	0.01
intActPPIData	0.00	0.00	0.07
map2Systematic	0	0	0
ppipred	0.00	0.00	0.06
sWAC2Sys	0.00	0.00	0.08
stochasticBaits	0.01	0.00	0.03
tableList	0.00	0.00	0.05
twTableAPMS	0.00	0.00	0.07
twTableY2H	0.00	0.00	0.11
viableProteins	0.02	0.00	0.08
y2h	0	0	0
y2hSysGW	0.03	0.00	0.08