BioC experimental data: CHECK report for hapmap500knsp on moscato1

Package: hapmap500knsp

Version: 1.3.5

Command: rm -rf hapmap500knsp.buildbin-libdir && mkdir hapmap500knsp.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=hapmap500knsp.buildbin-libdir hapmap500knsp_1.3.5.tar.gz >hapmap500knsp-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=hapmap500knsp.buildbin-libdir --install="check:hapmap500knsp-install.out" --force-multiarch --no-vignettes --timings hapmap500knsp_1.3.5.tar.gz && mv hapmap500knsp.buildbin-libdir/* hapmap500knsp.Rcheck/ && rmdir hapmap500knsp.buildbin-libdir

StartedAt: 2012-03-23 14:19:06 -0700 (Fri, 23 Mar 2012)

EndedAt: 2012-03-23 14:25:21 -0700 (Fri, 23 Mar 2012)

EllapsedTime: 374.9 seconds

RetCode: 0

Status: OK

CheckDir: hapmap500knsp.Rcheck

Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-data-experiment/meat/hapmap500knsp.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hapmap500knsp/DESCRIPTION' ... OK
* this is package 'hapmap500knsp' version '1.3.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'hapmap500knsp' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 188.0Mb
  sub-directories of 1Mb or more:
    celFiles  188.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'hapmap500knsp/R/zzz.R':
  .onLoad calls:
    message(paste("/-------------------------------------------\\",     "|         SAMPLE HAPMAP 500K NSP            |", "|-------------------------------------------|",     "| Data obtained from http://www.hapmap.org  |", "| This package is meant to be used only for |",     "| demonstration of BioConductor packages.   |", "| Access http://www.hapmap.org for details. |",     "|-------------------------------------------|", "| The contents of this package are provided |",     "| in good faith and the maintainer does not |", "| warrant their accuracy.                   |",     "\\-------------------------------------------/", sep = "\n"))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK


install for i386

* installing *source* package 'hapmap500knsp' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
/-------------------------------------------\
|         SAMPLE HAPMAP 500K NSP            |
|-------------------------------------------|
| Data obtained from http://www.hapmap.org  |
| This package is meant to be used only for |
| demonstration of BioConductor packages.   |
| Access http://www.hapmap.org for details. |
|-------------------------------------------|
| The contents of this package are provided |
| in good faith and the maintainer does not |
| warrant their accuracy.                   |
\-------------------------------------------/

add DLL for x64

* installing *source* package 'hapmap500knsp' ...
** testing if installed package can be loaded
/-------------------------------------------\
|         SAMPLE HAPMAP 500K NSP            |
|-------------------------------------------|
| Data obtained from http://www.hapmap.org  |
| This package is meant to be used only for |
| demonstration of BioConductor packages.   |
| Access http://www.hapmap.org for details. |
|-------------------------------------------|
| The contents of this package are provided |
| in good faith and the maintainer does not |
| warrant their accuracy.                   |
\-------------------------------------------/
* MD5 sums
packaged installation of 'hapmap500knsp' as hapmap500knsp_1.3.5.zip

* DONE (hapmap500knsp)

Summary

Command output