Package: dyebiasexamples

Version: 1.0.6

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch dyebiasexamples_1.0.6.tar.gz

StartedAt: 2011-07-06 15:11:42 -0700 (Wed, 06 Jul 2011)

EndedAt: 2011-07-06 15:13:12 -0700 (Wed, 06 Jul 2011)

EllapsedTime: 89.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: dyebiasexamples.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.9-data-experiment/meat/dyebiasexamples.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dyebiasexamples/DESCRIPTION' ... OK
* this is package 'dyebiasexamples' version '1.0.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'dyebiasexamples' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 40.2Mb
  sub-directories of 1Mb or more:
    data        5.3Mb
    extradata  34.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'README'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.9-data-experiment/meat/dyebiasexamples.Rcheck/00check.log'
for details

* installing *source* package 'dyebiasexamples' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: limma
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Setting options('download.file.method.GEOquery'='curl')
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Setting options('download.file.method.GEOquery'='curl')

* DONE (dyebiasexamples)

name	user	system	elapsed
data.raw	1.50	0.01	1.51
dyebias.geo2marray	0	0	0
dyebias.umcu.proper.estimators	4.14	0.03	4.55