Package: charmData

Version: 0.99.3

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch charmData_0.99.3.tar.gz

StartedAt: 2011-07-01 12:44:38 -0700 (Fri, 01 Jul 2011)

EndedAt: 2011-07-01 12:46:58 -0700 (Fri, 01 Jul 2011)

EllapsedTime: 139.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: charmData.Rcheck

Warnings: 2

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/charmData.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'charmData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'charmData' version '0.99.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'charmData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 48.7Mb
  sub-directories of 1Mb or more:
    data  48.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  '136421_532.xys' '136421_635.xys' '136600_532.xys' '136600_635.xys'
  '3788602_532.xys' '3788602_635.xys' '3822402_532.xys'
  '3822402_635.xys' '5739902_532.xys' '5739902_635.xys'
  '5875602_532.xys' '5875602_635.xys'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.9-data-experiment/meat/charmData.Rcheck/00check.log'
for details

* installing *source* package 'charmData' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

Welcome to charm version 1.5.1
================================================================================
Welcome to oligoClasses version 1.15.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
================================================================================
Welcome to oligo version 1.17.0
================================================================================
Warning messages:
1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 

* DONE (charmData)

name	user	system	elapsed