Package: SpikeInSubset

Version: 1.2.8

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch SpikeInSubset_1.2.8.tar.gz

StartedAt: 2011-07-01 13:06:30 -0700 (Fri, 01 Jul 2011)

EndedAt: 2011-07-01 13:07:18 -0700 (Fri, 01 Jul 2011)

EllapsedTime: 47.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: SpikeInSubset.Rcheck

Warnings: 2

* using log directory '/Users/biocbuild/bbs-2.9-data-experiment/meat/SpikeInSubset.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-24 r55634)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'SpikeInSubset/DESCRIPTION' ... OK
* this is package 'SpikeInSubset' version '1.2.8'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SpikeInSubset' can be installed ... WARNING
Found the following significant warnings:
  Warning: /Users/biocbuild/bbs-2.9-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
See '/Users/biocbuild/bbs-2.9-data-experiment/meat/SpikeInSubset.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is 20.5Mb
  sub-directories of 1Mb or more:
    data  20.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: xhyb.Rd: docType 'instance' is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.9-data-experiment/meat/SpikeInSubset.Rcheck/00check.log'
for details

* installing *source* package 'SpikeInSubset' ...
** R
** data
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
Warning: /Users/biocbuild/bbs-2.9-data-experiment/meat/SpikeInSubset.Rcheck/00_pkg_src/SpikeInSubset/man/xhyb.Rd: docType 'instance' is unrecognized
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (SpikeInSubset)