BioC experimental data: CHECK report for cnvGSAdata on george2

Package: cnvGSAdata

Version: 0.99.4

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings cnvGSAdata_0.99.4.tar.gz

StartedAt: 2013-10-08 12:31:32 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 12:32:20 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 48.3 seconds

RetCode: 0

Status:  OK

CheckDir: cnvGSAdata.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/cnvGSAdata.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cnvGSAdata/DESCRIPTION’ ... OK
* this is package ‘cnvGSAdata’ version ‘0.99.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cnvGSAdata’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is 30.5Mb
  sub-directories of 1Mb or more:
    data      2.0Mb
    extdata  28.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [18s/20s] OK
Examples with CPU or elapsed time > 5s
                                                user system elapsed
merge_00k_flank_hg18_refGene_jun2011_exon.gvf 11.525  0.176  13.204
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/cnvGSAdata.Rcheck/00check.log’
for details.

* installing *source* package ‘cnvGSAdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cnvGSAdata)

name	user	system	elapsed
cnv.gvf	2.596	0.020	2.812
gsData.gmt	2.176	0.008	2.318
merge_00k_flank_hg18_refGene_jun2011_exon.gvf	11.525	0.176	13.204
merge_00k_flank_hg18_refGene_jun2011_transcript.gvf	0.468	0.032	0.968
s2class.txt	0.016	0.000	0.034