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BioC experimental data: CHECK report for MAQCsubset on george2

This page was generated on 2013-10-08 16:07:04 -0700 (Tue, 08 Oct 2013).

Package 95/156HostnameOS / ArchBUILDCHECKBUILD BIN
MAQCsubset 1.0.27
VJ Carey
Snapshot Date: 2013-10-08 10:15:19 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MAQCsubset
Last Changed Rev: 2317 / Revision: 2510
Last Changed Date: 2013-04-03 15:11:40 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: MAQCsubset
Version: 1.0.27
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings MAQCsubset_1.0.27.tar.gz
StartedAt: 2013-10-08 13:00:37 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 13:08:55 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 498.6 seconds
RetCode: 0
Status:  OK 
CheckDir: MAQCsubset.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/MAQCsubset.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MAQCsubset/DESCRIPTION’ ... OK
* this is package ‘MAQCsubset’ version ‘1.0.27’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MAQCsubset’ can be installed ... [45s/47s] OK
* checking installed package size ... NOTE
  installed size is 64.7Mb
  sub-directories of 1Mb or more:
    data  64.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [40s/41s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
proboStruct-class 9.673  0.132  10.511
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/MAQCsubset.Rcheck/00check.log’
for details.

MAQCsubset.Rcheck/00install.out:

* installing *source* package ‘MAQCsubset’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘image’ when loading ‘graphics’
Warning: replacing previous import ‘nleqslv’ when loading ‘nleqslv’
Creating a generic function for ‘lines’ from package ‘graphics’ in package ‘MAQCsubset’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘image’ when loading ‘graphics’
Warning: replacing previous import ‘nleqslv’ when loading ‘nleqslv’
* DONE (MAQCsubset)

MAQCsubset.Rcheck/MAQCsubset-Ex.timings:

nameusersystemelapsed
MAQCsubset1.7520.0721.834
gehMAQCsubDef1.4240.0321.572
gnfCerebHi0.0320.0040.089
proboStruct-class 9.673 0.13210.511
proboscis3.7520.0843.837