BioC experimental data: CHECK report for MAQCsubset on george2

Package: MAQCsubset

Version: 1.0.27

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings MAQCsubset_1.0.27.tar.gz

StartedAt: 2013-10-08 13:00:37 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:08:55 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 498.6 seconds

RetCode: 0

Status:  OK

CheckDir: MAQCsubset.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/MAQCsubset.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MAQCsubset/DESCRIPTION’ ... OK
* this is package ‘MAQCsubset’ version ‘1.0.27’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MAQCsubset’ can be installed ... [45s/47s] OK
* checking installed package size ... NOTE
  installed size is 64.7Mb
  sub-directories of 1Mb or more:
    data  64.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [40s/41s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
proboStruct-class 9.673  0.132  10.511
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/MAQCsubset.Rcheck/00check.log’
for details.

* installing *source* package ‘MAQCsubset’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘image’ when loading ‘graphics’
Warning: replacing previous import ‘nleqslv’ when loading ‘nleqslv’
Creating a generic function for ‘lines’ from package ‘graphics’ in package ‘MAQCsubset’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘image’ when loading ‘graphics’
Warning: replacing previous import ‘nleqslv’ when loading ‘nleqslv’
* DONE (MAQCsubset)

name	user	system	elapsed
MAQCsubset	1.752	0.072	1.834
gehMAQCsubDef	1.424	0.032	1.572
gnfCerebHi	0.032	0.004	0.089
proboStruct-class	9.673	0.132	10.511
proboscis	3.752	0.084	3.837