BioC experimental data: CHECK report for FANTOM3and4CAGE on moscato2

Package: FANTOM3and4CAGE

Version: 0.99.1

Command: rm -rf FANTOM3and4CAGE.buildbin-libdir && mkdir FANTOM3and4CAGE.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_0.99.1.tar.gz >FANTOM3and4CAGE-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_0.99.1.tar.gz && mv FANTOM3and4CAGE.buildbin-libdir/* FANTOM3and4CAGE.Rcheck/ && rmdir FANTOM3and4CAGE.buildbin-libdir

StartedAt: 2013-10-08 13:19:44 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 13:22:20 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 155.9 seconds

RetCode: 0

Status:  OK

CheckDir: FANTOM3and4CAGE.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/FANTOM3and4CAGE.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FANTOM3and4CAGE/DESCRIPTION' ... OK
* this is package 'FANTOM3and4CAGE' version '0.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FANTOM3and4CAGE' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.7Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... NOTE
The following directories should probably not be installed:
  'images'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... [32s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
FANTOMtissueCAGEhuman     15.62   0.28   15.90
FANTOMtissueCAGEmouse      7.38   0.14    7.52
FANTOMtimecourseCAGEhuman  6.77   0.18    6.98
** running examples for arch 'x64' ... [28s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
FANTOMtissueCAGEhuman     14.63   0.22   14.85
FANTOMtimecourseCAGEhuman  7.27   0.09    7.36
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'FANTOM3and4CAGE' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FANTOM3and4CAGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FANTOM3and4CAGE' as FANTOM3and4CAGE_0.99.1.zip
* DONE (FANTOM3and4CAGE)