Package: staRank

Version: 1.1.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings staRank_1.1.0.tar.gz

StartedAt: 2013-01-16 06:37:26 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 06:40:55 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 208.2 seconds

RetCode: 0

Status:  OK

CheckDir: staRank.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/staRank.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘staRank/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘staRank’ version ‘1.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘staRank’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘staRank’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘summary’ from package ‘base’ in package ‘staRank’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘staRank.Rnw’ 
** testing if installed package can be loaded

* DONE (staRank)

name	user	system	elapsed
RankSummary-class	0.452	0.004	0.458
aggregRank	0.172	0.000	0.171
dataFormatRSA	0.164	0.004	0.166
getRankmatrix	0.172	0.000	0.175
getSampleScores-methods	0.164	0.000	0.165
getStability	0.176	0.000	0.175
mwTest2samp	0.008	0.004	0.013
runRSA	0.172	0.000	0.170
staRank-package	0.168	0.000	0.169
stabilityRanking-methods	0.500	0.008	0.512
summary-methods	0.172	0.000	0.170
summaryStats-methods	0.176	0.000	0.173
uniqueRSARanking	0.168	0.000	0.170