qpgraph 1.16.3
Robert Castelo
| Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/qpgraph | | Last Changed Rev: 78820 / Revision: 81334 | | Last Changed Date: 2013-07-24 09:27:03 -0700 (Wed, 24 Jul 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_1.16.3.tar.gz'
>>>>>>>
* installing *source* package 'qpgraph' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin10.8.0
checking host system type... i686-apple-darwin10.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include -mtune=core2 -g -O2 -Wall -pedantic -fPIC -mtune=core2 -g -O2 -c cliquer.c -o cliquer.o
cliquer.c: In function 'clique_print_time':
cliquer.c:1788: warning: unused variable 'fp'
cliquer.c: In function 'clique_print_time_always':
cliquer.c:1837: warning: unused variable 'fp'
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include -mtune=core2 -g -O2 -Wall -pedantic -fPIC -mtune=core2 -g -O2 -c graph.c -o graph.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include -mtune=core2 -g -O2 -Wall -pedantic -fPIC -mtune=core2 -g -O2 -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'stat_mis':
qpgraph.c:4105: warning: unused variable 'k'
qpgraph.c:4105: warning: unused variable 'j'
qpgraph.c:4105: warning: unused variable 'i'
qpgraph.c: In function 'lr_em':
qpgraph.c:4147: warning: unused variable 'Y_j'
qpgraph.c: In function 'ssd_A':
qpgraph.c:7831: warning: unused variable 'm'
qpgraph.c:7831: warning: unused variable 'k'
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:7960: warning: assignment from incompatible pointer type
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include -mtune=core2 -g -O2 -Wall -pedantic -fPIC -mtune=core2 -g -O2 -c reorder.c -o reorder.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function from function 'rmvnorm' in package 'qpgraph'
Creating a generic function from function 'sim.cross' in package 'qpgraph'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (qpgraph)
>>>>>>>
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"