metahdep 1.18.0 John R. Stevens
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/metahdep | Last Changed Rev: 75263 / Revision: 76155 | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metahdep.buildbin-libdir metahdep_1.18.0.tar.gz'
>>>>>>>
* installing *source* package 'metahdep' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c metahdep.c -o metahdep.o
metahdep.c:71:46: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
temp_array = (int *) R_alloc((last - first + 1), sizeof(int));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
metahdep.c:107:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
sort_index = (int *) R_alloc(num_names, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
metahdep.c:155:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
index_ptr_array = (int**) R_alloc(num_studies, sizeof(int *));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
metahdep.c:163:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
index_ptr_array[i] = (int *) R_alloc(study_length, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
metahdep.c:174:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
list_elements = (SEXP *) R_alloc(num_studies, sizeof(SEXP));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
metahdep.c:451:26: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
study = (int *) R_alloc(max_rows, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
metahdep.c:452:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
row = (int *) R_alloc(max_rows, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
metahdep.c:471:79: warning: incompatible pointer to integer conversion passing 'const char *' to parameter of type 'char' [-Wint-conversion]
index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:395:18: note: expanded from macro 'CHAR'
#define CHAR(x) R_CHAR(x)
^˜˜˜˜˜˜˜˜
metahdep.c:372:103: note: passing argument to parameter 'chipset_name' here
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
^
metahdep.c:483:31: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
study = (int *) R_alloc(max_rows, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
metahdep.c:484:29: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
row = (int *) R_alloc(max_rows, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
10 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o metahdep.so metahdep.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/metahdep.buildbin-libdir/metahdep/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (metahdep)
>>>>>>>
>>>>>>> FIXING LINKS FOR metahdep.buildbin-libdir/metahdep/libs//metahdep.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "metahdep.buildbin-libdir/metahdep/libs//metahdep.so"