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BioC 2.12: BUILD BIN report for makecdfenv on petty

This page was generated on 2013-10-09 09:39:21 -0700 (Wed, 09 Oct 2013).

Package 383/671HostnameOS / ArchBUILDCHECKBUILD BIN
makecdfenv 1.36.0
James W. MacDonald
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/makecdfenv
Last Changed Rev: 75289 / Revision: 81334
Last Changed Date: 2013-04-04 10:51:44 -0700 (Thu, 04 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS [ OK ]

Summary

Package: makecdfenv
Version: 1.36.0
Command: rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R makecdfenv.buildbin-libdir
StartedAt: 2013-10-09 00:58:35 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 00:59:00 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 25.5 seconds
RetCode: 0
Status:  OK 
PackageFile: makecdfenv_1.36.0.tgz
PackageFileSize: 3.201 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=makecdfenv.buildbin-libdir makecdfenv_1.36.0.tar.gz'
>>>>>>> 

* installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c read_cdffile.c -o read_cdffile.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/makecdfenv.buildbin-libdir/makecdfenv/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs//makecdfenv.so"