inveRsion 1.8.0
Alejandro Caceres
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/inveRsion | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=inveRsion.buildbin-libdir inveRsion_1.8.0.tar.gz'
>>>>>>>
* installing *source* package 'inveRsion' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c init_inveRsion.c -o init_inveRsion.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inversionModel.c -o inversionModel.o
inversionModel.c:176:23: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
levelleft[*nlev-1]=dat[(*nr)*(c1)+0];
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
inversionModel.c:177:24: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
levelright[*nlev-1]=dat[(*nr)*(c2)+0];
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
inversionModel.c:195:28: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
levelleft[*nlev-1]=dat[(*nr)*(c1)+row];
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
inversionModel.c:196:29: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
levelright[*nlev-1]=dat[(*nr)*(c2)+row];
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
inversionModel.c:167:8: warning: unused variable 'ncol' [-Wunused-variable]
int ncol, row, level, found, c1, c2;
^
inversionModel.c:240:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
double *BB= (double *)malloc(((*nr)*(*nr))*sizeof(*BB));
˜˜˜˜˜^˜˜˜˜˜ ˜
inversionModel.c:316:4: warning: '/*' within block comment [-Wcomment]
/* compute block b1b2b3b4, level its haplotypes and get their frequencies*/
^
inversionModel.c:237:26: warning: unused variable 'i' [-Wunused-variable]
int ncol, row, level, i;
^
inversionModel.c:237:8: warning: unused variable 'ncol' [-Wunused-variable]
int ncol, row, level, i;
^
9 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c writeGenoDat.c -o writeGenoDat.o
writeGenoDat.c:36:20: warning: unused variable 'fm' [-Wunused-variable]
FILE *fg, *fa, *fm;
^
writeGenoDat.c:36:15: warning: unused variable 'fa' [-Wunused-variable]
FILE *fg, *fa, *fm;
^
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o inveRsion.so init_inveRsion.o inversionModel.o writeGenoDat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/inveRsion.buildbin-libdir/inveRsion/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'inveRsion'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (inveRsion)
>>>>>>>
>>>>>>> FIXING LINKS FOR inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "inveRsion.buildbin-libdir/inveRsion/libs//inveRsion.so"